Browse Element(s) Details


OsAffx.8116.1.S1_at

Description tigr:9638.m02452
TID=OsAffx.8116.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2883011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28780OsAffx.30578.1.S1_at11/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30578.1.S1_x_at11/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30578.2.S1_x_at10/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30579.1.S1_x_at1/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28790OsAffx.30579.1.S1_x_at11/1110+14686132..14687253BTB/POZ domain containing protein
LOC_Os10g28790OsAffx.30579.1.S1_at11/1110+14686132..14687253BTB/POZ domain containing protein
LOC_Os10g28800NANA10+14688461..14689377hypothetical protein
LOC_Os10g28810OsAffx.30580.1.S1_at11/1110+14690522..14691709BTB/POZ domain containing protein
LOC_Os10g28820OsAffx.20331.1.S1_at11/1110+14696426..14697550BTB/POZ domain containing protein
LOC_Os10g28830OsAffx.8116.1.S1_at11/1110+14705000..14705534hypothetical protein
LOC_Os10g28840OsAffx.6801.1.S1_at11/1110+14706697..14707554BTB/POZ domain containing protein
LOC_Os10g28840OsAffx.18433.1.S1_x_at1/1110+14706697..14707554BTB/POZ domain containing protein
LOC_Os10g28850OsAffx.8115.1.S1_at11/1110+14709194..14711308hypothetical protein
LOC_Os10g28850OsAffx.14019.1.S1_at1/1110+14709194..14711308hypothetical protein
LOC_Os10g28860OsAffx.18433.1.S1_x_at11/1110+14714660..14715766BTB/POZ domain containing protein
LOC_Os10g28860OsAffx.18433.1.S1_at11/1110+14714660..14715766BTB/POZ domain containing protein
LOC_Os10g28870OsAffx.30581.1.S1_at10/1110+14718088..14719833BTB/POZ domain containing protein
LOC_Os10g28890NANA10+14722103..14726708retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8116.1.S1_at--1013--7511Chr10:14705428..14705452 (25 bp)
GTGGCTTCGCCACTGGCTCTGCTGA
LOC_Os10g28830
OsAffx.8116.1.S1_at--1096--6131Chr10:14705399..14705423 (25 bp)
GAGGTGGCTGGCACCTCACGTAAAA
LOC_Os10g28830
OsAffx.8116.1.S1_at--388--7511Chr10:14705396..14705420 (25 bp)
GTGGCTGGCACCTCACGTAAAACAG
LOC_Os10g28830
OsAffx.8116.1.S1_at--640--8251Chr10:14705279..14705414 (25 bp)
GGCACCTCACGTAAAACAGACTTTG
LOC_Os10g28830
OsAffx.8116.1.S1_at--549--2491Chr10:14705265..14705287 (23 bp)
AACAGACTTTGATCGGAAGCTGCAA
LOC_Os10g28830
OsAffx.8116.1.S1_at--1093--2031Chr10:14705260..14705284 (25 bp)
ACTTTGATCGGAAGCTGCAATGCGA
LOC_Os10g28830
OsAffx.8116.1.S1_at--455--2691Chr10:14705249..14705273 (25 bp)
AAGCTGCAATGCGATGAGGGAAAAG
LOC_Os10g28830
OsAffx.8116.1.S1_at--72--6311Chr10:14705089..14705261 (25 bp)
GATGAGGGAAAAGGCCCACCATTAT
LOC_Os10g28830
OsAffx.8116.1.S1_at--361--2311Chr10:14705080..14705252 (25 bp)
AAAGGCCCACCATTATATTGGAATG
LOC_Os10g28830
OsAffx.8116.1.S1_at--516--9871Chr10:14705065..14705089 (25 bp)
TATTGGAATGGTGCGGGAGAACTCA
LOC_Os10g28830
OsAffx.8116.1.S1_at--1007--7291Chr10:14705055..14705079 (25 bp)
GTGCGGGAGAACTCATTAAATATTC
LOC_Os10g28830
Target Sequence 
GTGGCTTCGCCACTGGCTCTGCTGACGGCGAGGTGGCTGGCACCTCACGTAAAACAGACTTTGATCGGAAGCTGCAATGC
GATGAGGGAAAAGGCCCACCATTATATTGGAATGGTGCGGGAGAACTCATTAAATATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis