Browse Element(s) Details


OsAffx.20331.1.S1_at

Description gb:NM_196561.1
DB_XREF= gi:37534481
TID=OsAffx.20331.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0075H14.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2882011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28750NANA10+14672567..14673019transposon protein, putative, unclassified
LOC_Os10g28760OsAffx.30578.2.S1_x_at11/1110+14674030..14675178BTB/POZ domain containing protein
LOC_Os10g28760OsAffx.30578.1.S1_x_at4/1110+14674030..14675178BTB/POZ domain containing protein
LOC_Os10g28760OsAffx.30579.1.S1_x_at2/1110+14674030..14675178BTB/POZ domain containing protein
LOC_Os10g28760OsAffx.30579.1.S1_at1/1110+14674030..14675178BTB/POZ domain containing protein
LOC_Os10g28770OsAffx.30578.2.S1_x_at11/1110+14676765..14677883BTB/POZ domain containing protein
LOC_Os10g28770OsAffx.30578.1.S1_x_at4/1110+14676765..14677883BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30578.1.S1_at11/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30578.1.S1_x_at11/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30578.2.S1_x_at10/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30579.1.S1_x_at1/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28790OsAffx.30579.1.S1_x_at11/1110+14686132..14687253BTB/POZ domain containing protein
LOC_Os10g28790OsAffx.30579.1.S1_at11/1110+14686132..14687253BTB/POZ domain containing protein
LOC_Os10g28800NANA10+14688461..14689377hypothetical protein
LOC_Os10g28810OsAffx.30580.1.S1_at11/1110+14690522..14691709BTB/POZ domain containing protein
LOC_Os10g28820OsAffx.20331.1.S1_at11/1110+14696426..14697550BTB/POZ domain containing protein
LOC_Os10g28830OsAffx.8116.1.S1_at11/1110+14705000..14705534hypothetical protein
LOC_Os10g28840OsAffx.6801.1.S1_at11/1110+14706697..14707554BTB/POZ domain containing protein
LOC_Os10g28840OsAffx.18433.1.S1_x_at1/1110+14706697..14707554BTB/POZ domain containing protein
LOC_Os10g28850OsAffx.8115.1.S1_at11/1110+14709194..14711308hypothetical protein
LOC_Os10g28850OsAffx.14019.1.S1_at1/1110+14709194..14711308hypothetical protein
LOC_Os10g28860OsAffx.18433.1.S1_x_at11/1110+14714660..14715766BTB/POZ domain containing protein
LOC_Os10g28860OsAffx.18433.1.S1_at11/1110+14714660..14715766BTB/POZ domain containing protein
LOC_Os10g28870OsAffx.30581.1.S1_at10/1110+14718088..14719833BTB/POZ domain containing protein
LOC_Os10g28890NANA10+14722103..14726708retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20331.1.S1_at--377--5831Chr10:14696954..14696978 (25 bp)
GACCTTCTGGACTCCAAGCACGGCG
LOC_Os10g28820
OsAffx.20331.1.S1_at--433--892Chr10:14697147..14697171 (25 bp)
AGGCGCCGGTGTTCTCCGCTCTGCT
LOC_Os10g28820
OsAffx.20331.1.S1_at--855--6371Chr10:14697240..14697264 (25 bp)
GATCGTATTCGGAGGAGGCCGCCAT
LOC_Os10g28820
OsAffx.20331.1.S1_at--143--3851Chr10:14697311..14697335 (25 bp)
CTGAAGCTGCTCTACGAAGACAAGC
LOC_Os10g28820
OsAffx.20331.1.S1_at--705--5371Chr10:14697326..14697350 (25 bp)
GAAGACAAGCTACGCAGGCACATCG
LOC_Os10g28820
OsAffx.20331.1.S1_at--145--2711Chr10:14697332..14697356 (25 bp)
AAGCTACGCAGGCACATCGAAGCCG
LOC_Os10g28820
OsAffx.20331.1.S1_at--466--4171Chr10:14697364..14697388 (25 bp)
CGCCTCCATGCTCGCGTTGGTTGAG
LOC_Os10g28820
OsAffx.20331.1.S1_at--260--9691Chr10:14697451..14697475 (25 bp)
TCACGCCGCCATGGGAAGCGATGGA
LOC_Os10g28820
OsAffx.20331.1.S1_at--703--5411Chr10:14697465..14697489 (25 bp)
GAAGCGATGGATTTGAGCATTTATC
LOC_Os10g28820
OsAffx.20331.1.S1_at--621--8911Chr10:14697478..14697502 (25 bp)
TGAGCATTTATCCAGGAGCTGCCCC
LOC_Os10g28820
OsAffx.20331.1.S1_at--619--1591Chr10:14697494..14697518 (25 bp)
AGCTGCCCCGGTGTGATCAAGGAGC
LOC_Os10g28820
Target Sequence 
GACCTTCTGGACTCCAAGCACGGCGCCGACGTCACGTTCCAGGTCGGCGGCGAGGCGTTCCGCGCGCACCGGTACGTCCT
CGCGGCGCGGTCGCCGGTCTTCAGGGCGGAGCTGTTCGGCGCCATGAGGGAGGCCACCGCCGCGGCCGCCGCGTCGTCGT
CGGACTCGGAGGCGATCCGCGTGGACGACATGGAGGCGCCGGTGTTCTCCGCTCTGCTCCGCTTCGTGTACACCGACGCG
TTGCCGGCGCCCGGCGGAGCGGACGACGGACAAGCGGCAGGAGGAGGATCGTATTCGGAGGAGGCCGCCATGGCTCAGCA
CCTGCTCGTCGCGGCGGACAGGTACGACCTGAAGAGGCTGAAGCTGCTCTACGAAGACAAGCTACGCAGGCACATCGAAG
CCGCCTCCGCCGCCTCCATGCTCGCGTTGGTTGAGCAGCACCATTGCCGAGGCCTCAAGGAGGCGTGCTTGGTGTTCCTC
AGCTCGCCGGCCAACCTTCACGCCGCCATGGGAAGCGATGGATTTGAGCATTTATCCAGGAGCTGCCCCGGTGTGATCAA
GGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis