Browse Element(s) Details


OsAffx.6801.1.S1_at

Description tigr:9638.m02453
TID=OsAffx.6801.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2884011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28780OsAffx.30578.1.S1_at11/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30578.1.S1_x_at11/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30578.2.S1_x_at10/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30579.1.S1_x_at1/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28790OsAffx.30579.1.S1_x_at11/1110+14686132..14687253BTB/POZ domain containing protein
LOC_Os10g28790OsAffx.30579.1.S1_at11/1110+14686132..14687253BTB/POZ domain containing protein
LOC_Os10g28800NANA10+14688461..14689377hypothetical protein
LOC_Os10g28810OsAffx.30580.1.S1_at11/1110+14690522..14691709BTB/POZ domain containing protein
LOC_Os10g28820OsAffx.20331.1.S1_at11/1110+14696426..14697550BTB/POZ domain containing protein
LOC_Os10g28830OsAffx.8116.1.S1_at11/1110+14705000..14705534hypothetical protein
LOC_Os10g28840OsAffx.6801.1.S1_at11/1110+14706697..14707554BTB/POZ domain containing protein
LOC_Os10g28840OsAffx.18433.1.S1_x_at1/1110+14706697..14707554BTB/POZ domain containing protein
LOC_Os10g28850OsAffx.8115.1.S1_at11/1110+14709194..14711308hypothetical protein
LOC_Os10g28850OsAffx.14019.1.S1_at1/1110+14709194..14711308hypothetical protein
LOC_Os10g28860OsAffx.18433.1.S1_x_at11/1110+14714660..14715766BTB/POZ domain containing protein
LOC_Os10g28860OsAffx.18433.1.S1_at11/1110+14714660..14715766BTB/POZ domain containing protein
LOC_Os10g28870OsAffx.30581.1.S1_at10/1110+14718088..14719833BTB/POZ domain containing protein
LOC_Os10g28890NANA10+14722103..14726708retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g28900NANA10+14732430..14733020hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6801.1.S1_at--1075--9331Chr10:14707162..14707186 (25 bp)
TCGCGGGTCTTCAGGGCGGAACTCT
LOC_Os10g28840
OsAffx.6801.1.S1_at--465--7151Chr10:14707168..14707192 (25 bp)
GTCTTCAGGGCGGAACTCTTCGGCC
LOC_Os10g28840
OsAffx.6801.1.S1_at--1088--1531Chr10:14707337..14707361 (25 bp)
AGCATCTCATCGTCGCGGCTGATAG
LOC_Os10g28840
OsAffx.6801.1.S1_at--904--9411Chr10:14707346..14707370 (25 bp)
TCGTCGCGGCTGATAGGTATGATCT
LOC_Os10g28840
OsAffx.6801.1.S1_at--725--271Chr10:14707358..14707382 (25 bp)
ATAGGTATGATCTGGAGAGGCTGAA
LOC_Os10g28840
OsAffx.6801.1.S1_at--1102--4751Chr10:14707377..14707401 (25 bp)
GCTGAAGGCTGAAGCTAATCTGCGA
LOC_Os10g28840
OsAffx.6801.1.S1_at--1036--9751Chr10:14707392..14707416 (25 bp)
TAATCTGCGAGGAGAGGCTGTGCGA
LOC_Os10g28840
OsAffx.6801.1.S1_at--1027--8691Chr10:14707410..14707434 (25 bp)
TGTGCGAGCACATTGGTGTGGCCAC
LOC_Os10g28840
OsAffx.6801.1.S1_at--113--3931Chr10:14707434..14707458 (25 bp)
CGGCGGCGACAACTTTAGAGCTCGC
LOC_Os10g28840
OsAffx.6801.1.S1_at--620--5611Chr10:14707441..14707465 (25 bp)
GACAACTTTAGAGCTCGCCGAGCGG
LOC_Os10g28840
OsAffx.6801.1.S1_at--525--9711Chr10:14707482..14707506 (25 bp)
TCAAGCGGGCGTGCATGGAGTTCCT
LOC_Os10g28840
Target Sequence 
TCGCGGGTCTTCAGGGCGGAACTCTTCGGCCCCATGAAGGAAGGCGTGGCGGCGAACGGCACCATCCAGGTGGACGACAT
GGACGCGGAGGTGTTCAGGTCGTTGCTCCACTTCGTGTACACCGACTCGCTGCCGCCGGAGACGGGGACGCCGCGGGAGG
GCGCCGCCATGGCGCAGCATCTCATCGTCGCGGCTGATAGGTATGATCTGGAGAGGCTGAAGGCTGAAGCTAATCTGCGA
GGAGAGGCTGTGCGAGCACATTGGTGTGGCCACGGCGGCGACAACTTTAGAGCTCGCCGAGCGGCACCACTGCCATGGGC
TCAAGCGGGCGTGCATGGAGTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis