Browse Element(s) Details


Os.55412.1.S1_at

Description gb:AK108036.1
DB_XREF= gi:32993245
TID=Os.55412.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55412 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C07, full insert sequence.
FL= gb:AK108036.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4573011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45660Os.22567.1.S1_at11/116+27655876..2765801214 kDa zinc-binding protein, putative, expressed
LOC_Os06g45670Os.13875.1.S1_at11/116+27658072..27660168Glycine cleavage system H protein 1, mitochondrial precursor, putative, expressed
LOC_Os06g45680OsAffx.26553.1.S1_at11/116+27661323..27661827hypothetical protein
LOC_Os06g45680OsAffx.26553.1.S1_x_at11/116+27661323..27661827hypothetical protein
LOC_Os06g45690OsAffx.5117.1.S1_at11/116+27665634..27669509NB-ARC domain containing protein, expressed
LOC_Os06g45700NANA6+27671518..27671769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g45710Os.11118.1.S1_at11/116+27675392..27678753Phosphoglycerate kinase, cytosolic, putative, expressed
LOC_Os06g45720OsAffx.28121.1.S1_at11/116+27680410..27681489BTB/POZ domain containing protein
LOC_Os06g45730Os.55412.1.S1_at11/116+27682634..27684558BTB/POZ domain containing protein, expressed
LOC_Os06g45730OsAffx.30579.1.S1_x_at1/116+27682634..27684558BTB/POZ domain containing protein, expressed
LOC_Os06g45740NANA6+27686302..27689021retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g45750NANA6+27689484..27692242retrotransposon protein, putative, unclassified
LOC_Os06g45760OsAffx.11259.1.S1_at1/116+27693865..27697529retrotransposon protein, putative, unclassified
LOC_Os06g45770OsAffx.30153.1.S1_at11/116+27698925..27702398BTB/POZ domain containing protein
LOC_Os06g45770OsAffx.30153.2.S1_x_at1/116+27698925..27702398BTB/POZ domain containing protein
LOC_Os06g45780OsAffx.5118.1.S1_x_at11/116+27703859..27704929hypothetical protein
LOC_Os06g45780Os.5212.2.S1_at6/116+27703859..27704929hypothetical protein
LOC_Os06g45780OsAffx.5136.1.S1_at3/116+27703859..27704929hypothetical protein
LOC_Os06g45790OsAffx.28123.1.S1_at11/116+27706148..27706591hypothetical protein
LOC_Os06g45800OsAffx.15942.1.S1_at11/116+27708822..27718177PAP/25A associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55412.1.S1_at--724--5631Chr06:27683566..27683590 (25 bp)
GACACGGTGTCGACCACGTTGGCGT
LOC_Os06g45730
Os.55412.1.S1_at--1106--2851Chr06:27683506..27683530 (25 bp)
AAGTGCGTCGAGTTCATTGCTGCCG
LOC_Os06g45730
Os.55412.1.S1_at--238--9171Chr06:27683486..27683510 (25 bp)
TGCCGGCACGGCTGAAAACCTTGAT
LOC_Os06g45730
Os.55412.1.S1_at--601--2371Chr06:27683471..27683495 (25 bp)
AAACCTTGATGCTGTGTTGGCCACT
LOC_Os06g45730
Os.55412.1.S1_at--912--1731Chr06:27683400..27683424 (25 bp)
ACCTTGTCAAGGTTGCCCGTGGAAG
LOC_Os06g45730
Os.55412.1.S1_at--546--2811Chr06:27682902..27682926 (25 bp)
AAGATTTCAAGTTGCTCCTGGATGC
LOC_Os06g45730
Os.55412.1.S1_at--1018--4051Chr06:27682874..27682898 (25 bp)
CGATGAGCTGCTGCGGACTTGCTGA
LOC_Os06g45730
Os.55412.1.S1_at--446--7971Chr06:27682784..27682808 (25 bp)
GGATCTGTTGTGTGATGCCCATGAT
LOC_Os06g45730
Os.55412.1.S1_at--1140--3511Chr06:27682765..27682789 (25 bp)
CATGATCATACGGTTCTCTTCTGCA
LOC_Os06g45730
Os.55412.1.S1_at--453--10571Chr06:27682752..27682776 (25 bp)
TTCTCTTCTGCAGTGGGCAATTCGT
LOC_Os06g45730
Os.55412.1.S1_at--131--2011Chr06:27682692..27682716 (25 bp)
ACTCTGTCTGTGTAGGGCCTTTCAT
LOC_Os06g45730
Target Sequence 
GACACGGTGTCGACCACGTTGGCGTTGGCGGAGCAGCACGACTGCTCGCATCTGAAGGCCAAGTGCGTCGAGTTCATTGC
TGCCGGCACGGCTGAAAACCTTGATGCTGTGTTGGCCACTGATGGGTTCAAACATCTGGAGGCGAGCTGTCCCTCGGTGT
TGACTGACCTTGTCAAGGTTGCCCGTGGAAGAAAGAATTAAAATGCAGGTAATAAGCAGAGAAGATTTCAAGTTGCTCCT
GGATGCTGGCGATGAGCTGCTGCGGACTTGCTGAGAGCAAACAAATCTTCAATTTGCTTATATGTTTGCTCTATCCTTTT
CTTTTGTGATTTTGCCATTGGATCTGTTGTGTGATGCCCATGATCATACGGTTCTCTTCTGCAGTGGGCAATTCGTAGTA
ATTAGACGCAACCCTGTCTAATCCCTCTGCTACTCTGTCTGTGTAGGGCCTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55412.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis