Browse Element(s) Details


OsAffx.28121.1.S1_at

Description tigr:9634.m04443
TID=OsAffx.28121.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4572011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45660Os.22567.1.S1_at11/116+27655876..2765801214 kDa zinc-binding protein, putative, expressed
LOC_Os06g45670Os.13875.1.S1_at11/116+27658072..27660168Glycine cleavage system H protein 1, mitochondrial precursor, putative, expressed
LOC_Os06g45680OsAffx.26553.1.S1_at11/116+27661323..27661827hypothetical protein
LOC_Os06g45680OsAffx.26553.1.S1_x_at11/116+27661323..27661827hypothetical protein
LOC_Os06g45690OsAffx.5117.1.S1_at11/116+27665634..27669509NB-ARC domain containing protein, expressed
LOC_Os06g45700NANA6+27671518..27671769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g45710Os.11118.1.S1_at11/116+27675392..27678753Phosphoglycerate kinase, cytosolic, putative, expressed
LOC_Os06g45720OsAffx.28121.1.S1_at11/116+27680410..27681489BTB/POZ domain containing protein
LOC_Os06g45730Os.55412.1.S1_at11/116+27682634..27684558BTB/POZ domain containing protein, expressed
LOC_Os06g45730OsAffx.30579.1.S1_x_at1/116+27682634..27684558BTB/POZ domain containing protein, expressed
LOC_Os06g45740NANA6+27686302..27689021retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g45750NANA6+27689484..27692242retrotransposon protein, putative, unclassified
LOC_Os06g45760OsAffx.11259.1.S1_at1/116+27693865..27697529retrotransposon protein, putative, unclassified
LOC_Os06g45770OsAffx.30153.1.S1_at11/116+27698925..27702398BTB/POZ domain containing protein
LOC_Os06g45770OsAffx.30153.2.S1_x_at1/116+27698925..27702398BTB/POZ domain containing protein
LOC_Os06g45780OsAffx.5118.1.S1_x_at11/116+27703859..27704929hypothetical protein
LOC_Os06g45780Os.5212.2.S1_at6/116+27703859..27704929hypothetical protein
LOC_Os06g45780OsAffx.5136.1.S1_at3/116+27703859..27704929hypothetical protein
LOC_Os06g45790OsAffx.28123.1.S1_at11/116+27706148..27706591hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28121.1.S1_at--403--8931Chr06:27680933..27680957 (25 bp)
TGACGAGCAAGAATGGCGCCGACAT
LOC_Os06g45720
OsAffx.28121.1.S1_at--272--9871Chr06:27680739..27680763 (25 bp)
TACACCGACACTTTGCCGGAGCAAG
LOC_Os06g45720
OsAffx.28121.1.S1_at--972--2451Chr06:27680692..27680716 (25 bp)
AACAATGGCGTATGGTCTTCTCGAA
LOC_Os06g45720
OsAffx.28121.1.S1_at--277--151Chr06:27680604..27680628 (25 bp)
ATTAGCGTGGACACCGCCGCGATGG
LOC_Os06g45720
OsAffx.28121.1.S1_at--114--8491Chr06:27680570..27680594 (25 bp)
TGGCGGAGCGCCATGGATGTACCAA
LOC_Os06g45720
OsAffx.28121.1.S1_at--447--6971Chr06:27680552..27680576 (25 bp)
GTACCAAGCTCAAGGCTAGGTGCAT
LOC_Os06g45720
OsAffx.28121.1.S1_at--215--1231Chr06:27680525..27680549 (25 bp)
AGTTCATCTTGGCTTCTCAGGAGAA
LOC_Os06g45720
OsAffx.28121.1.S1_at--236--971Chr06:27680507..27680531 (25 bp)
AGGAGAATTTCCACGCAGTCGCTGC
LOC_Os06g45720
OsAffx.28121.1.S1_at--272--5031Chr06:27680493..27680517 (25 bp)
GCAGTCGCTGCAACGGAGGGTTACA
LOC_Os06g45720
OsAffx.28121.1.S1_at--491--2711Chr06:27680469..27680493 (25 bp)
AAGCTTCTCATGGATAGCTGCCCCT
LOC_Os06g45720
OsAffx.28121.1.S1_at--964--9471Chr06:27680440..27680464 (25 bp)
TCTGAATGACCTTCTAGTGGCTGTT
LOC_Os06g45720
Target Sequence 
TGACGAGCAAGAATGGCGCCGACATCACGTTCCTCGTCTCCGGCGAGCCTGTCGCGGCGCACAGGTGCGTGCTCGCCGCG
AGGTCGCCGGTGTTCATGGCCGAGCTGTTCGGCGACATGAAGGAGAAAGACTCGCAGAGCATCGAGATCAAGGACATGGA
GGCAGAGGTCTTCAGGACCCTGCTCCACTTCATCTACACCGACACTTTGCCGGAGCAAGATGACGACGACGTCGAGGCTG
AAACAATGGCGTATGGTCTTCTCGAAGCCGCGGATCGGTACGGCGTGGAGAGGCTGATGCTGATCTGCGCGGAGAAGGTG
CACGCTGGCATTAGCGTGGACACCGCCGCGATGGCGTTGGCTCTGGCGGAGCGCCATGGATGTACCAAGCTCAAGGCTAG
GTGCATCGAGTTCATCTTGGCTTCTCAGGAGAATTTCCACGCAGTCGCTGCAACGGAGGGTTACAAGCTTCTCATGGATA
GCTGCCCCTCTGCTCTGAATGACCTTCTAGTGGCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis