Browse Element(s) Details


Os.11118.1.S1_at

Description gb:AK070705.1
DB_XREF= gi:32980729
TID=Os.11118.1
CNT=58
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11118 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for phosphoglycerate kinase (S374 gene), partial sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023060M06, full insert sequence.
FL= gb:AK101622.1 gb:AK070705.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4571011/11Phosphoglycerate kinase, cytosolic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45660Os.22567.1.S1_at11/116+27655876..2765801214 kDa zinc-binding protein, putative, expressed
LOC_Os06g45670Os.13875.1.S1_at11/116+27658072..27660168Glycine cleavage system H protein 1, mitochondrial precursor, putative, expressed
LOC_Os06g45680OsAffx.26553.1.S1_at11/116+27661323..27661827hypothetical protein
LOC_Os06g45680OsAffx.26553.1.S1_x_at11/116+27661323..27661827hypothetical protein
LOC_Os06g45690OsAffx.5117.1.S1_at11/116+27665634..27669509NB-ARC domain containing protein, expressed
LOC_Os06g45700NANA6+27671518..27671769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g45710Os.11118.1.S1_at11/116+27675392..27678753Phosphoglycerate kinase, cytosolic, putative, expressed
LOC_Os06g45720OsAffx.28121.1.S1_at11/116+27680410..27681489BTB/POZ domain containing protein
LOC_Os06g45730Os.55412.1.S1_at11/116+27682634..27684558BTB/POZ domain containing protein, expressed
LOC_Os06g45730OsAffx.30579.1.S1_x_at1/116+27682634..27684558BTB/POZ domain containing protein, expressed
LOC_Os06g45740NANA6+27686302..27689021retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g45750NANA6+27689484..27692242retrotransposon protein, putative, unclassified
LOC_Os06g45760OsAffx.11259.1.S1_at1/116+27693865..27697529retrotransposon protein, putative, unclassified
LOC_Os06g45770OsAffx.30153.1.S1_at11/116+27698925..27702398BTB/POZ domain containing protein
LOC_Os06g45770OsAffx.30153.2.S1_x_at1/116+27698925..27702398BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0004618molecular_functionphosphoglycerate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11118.1.S1_at--335--8911Chr06:27676045..27676069 (25 bp)
TGAGAAATTCGCTGCTGGCACTGAT
LOC_Os06g45710
Os.11118.1.S1_at--121--8031Chr06:27675776..27675800 (25 bp)
GGAGTCCTTGCTCTTAATGACGCAT
LOC_Os06g45710
Os.11118.1.S1_at--766--5751Chr06:27675758..27675782 (25 bp)
GACGCATAAGACTGGTGGCAAGCAT
LOC_Os06g45710
Os.11118.1.S1_at--61--1551Chr06:27675738..27675762 (25 bp)
AGCATATGACGCAATTTCCCTAGCC
LOC_Os06g45710
Os.11118.1.S1_at--1031--6571Chr06:27675703..27675727 (25 bp)
GTCTTGTTCGGACCTTGGTGTAAGT
LOC_Os06g45710
Os.11118.1.S1_at--253--2851Chr06:27675665..27675689 (25 bp)
AAGTCAGTCGTCTGCTACCTTTGAA
LOC_Os06g45710
Os.11118.1.S1_at--715--8291Chr06:27675631..27675655 (25 bp)
GGCTTCGCTTCAGGTATTGCTAGAT
LOC_Os06g45710
Os.11118.1.S1_at--499--291Chr06:27675595..27675619 (25 bp)
ATAATAAGCTTTTGGCGTCCTCGGC
LOC_Os06g45710
Os.11118.1.S1_at--1115--4431Chr06:27675521..27675545 (25 bp)
GCCATATTCTAGTTGCAGCAGTTTA
LOC_Os06g45710
Os.11118.1.S1_at--566--3111Chr06:27675485..27675509 (25 bp)
AATATCGCTCTTGCTGTTATGAATG
LOC_Os06g45710
Os.11118.1.S1_at--628--7331Chr06:27675423..27675447 (25 bp)
GTGCATACTGTTTTAAGCCTTCTCA
LOC_Os06g45710
Target Sequence 
TGAGAAATTCGCTGCTGGCACTGATGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATCATTG
GAGGTGGCGATTCTGTTGCTGCTGTCGAGAAGGCCGGGTTGGCGGACAAGATGAGCCACATTTCAACGGGAGGTGGCGCG
AGCTTGGAACTGTTGGAAGGCAAGACCCTCCCAGGAGTCCTTGCTCTTAATGACGCATAAGACTGGTGGCAAGCATATGA
CGCAATTTCCCTAGCCTTTTGCGGTGGTCTTGTTCGGACCTTGGTGTAAGTTTGTAAGAATGCAAAGTCAGTCGTCTGCT
ACCTTTGAACTTGAAATAGGCTTCGCTTCAGGTATTGCTAGATGACAGTGAATAATAATAAGCTTTTGGCGTCCTCGGCA
TGAGAGAAATGCCCGGCACAAACAAACTATAATGGTGTACTATATTTTGCCATATTCTAGTTGCAGCAGTTTACACTAAG
CTATAATATCGCTCTTGCTGTTATGAATGAGACCTGTACATGTTGTGTATGGAGACAAATGCCACTGTGCATACTGTTTT
AAGCCTTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis