Browse Element(s) Details


Os.13875.1.S1_at

Description gb:AK060567.1
DB_XREF= gi:32970585
TID=Os.13875.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13875 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023101D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-B03, full insert sequence.
FL= gb:AK058606.1 gb:AK060567.1 gb:AK071621.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4567011/11Glycine cleavage system H protein 1, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45650Os.28022.1.S1_s_at11/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.37090.1.S1_x_at10/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.52495.1.S1_at9/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.38268.2.S1_s_at1/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45660Os.22567.1.S1_at11/116+27655876..2765801214 kDa zinc-binding protein, putative, expressed
LOC_Os06g45670Os.13875.1.S1_at11/116+27658072..27660168Glycine cleavage system H protein 1, mitochondrial precursor, putative, expressed
LOC_Os06g45680OsAffx.26553.1.S1_at11/116+27661323..27661827hypothetical protein
LOC_Os06g45680OsAffx.26553.1.S1_x_at11/116+27661323..27661827hypothetical protein
LOC_Os06g45690OsAffx.5117.1.S1_at11/116+27665634..27669509NB-ARC domain containing protein, expressed
LOC_Os06g45700NANA6+27671518..27671769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g45710Os.11118.1.S1_at11/116+27675392..27678753Phosphoglycerate kinase, cytosolic, putative, expressed
LOC_Os06g45720OsAffx.28121.1.S1_at11/116+27680410..27681489BTB/POZ domain containing protein
LOC_Os06g45730Os.55412.1.S1_at11/116+27682634..27684558BTB/POZ domain containing protein, expressed
LOC_Os06g45730OsAffx.30579.1.S1_x_at1/116+27682634..27684558BTB/POZ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006546biological_processglycine catabolism
GO:0009853biological_processphotorespiration
GO:0019464biological_processglycine decarboxylation via glycine cleavage system
GO:0005739cellular_componentmitochondrion
GO:0005960cellular_componentglycine cleavage complex
GO:0004375molecular_functionglycine dehydrogenase (decarboxylating) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13875.1.S1_at--880--6231Chr06:27658444..27658468 (25 bp)
GATGGCAAACACTGATCAATCCCCT
LOC_Os06g45670
Os.13875.1.S1_at--787--6451Chr06:27658431..27658455 (25 bp)
GATCAATCCCCTAACTGCTGGATTT
LOC_Os06g45670
Os.13875.1.S1_at--821--10131Chr06:27658398..27658422 (25 bp)
TATGCAGCAACTCACCATCATGACA
LOC_Os06g45670
Os.13875.1.S1_at--261--411Chr06:27658382..27658406 (25 bp)
ATCATGACAATGAGCCATCTCGCCT
LOC_Os06g45670
Os.13875.1.S1_at--570--4451Chr06:27658361..27658385 (25 bp)
GCCTCTCCTACCACATTATATTATT
LOC_Os06g45670
Os.13875.1.S1_at--303--10411Chr06:27658270..27658294 (25 bp)
TTTTGTAGTGTCCTGATCATTCCGT
LOC_Os06g45670
Os.13875.1.S1_at--1078--8831Chr06:27658257..27658281 (25 bp)
TGATCATTCCGTTTGTGCTCCATTT
LOC_Os06g45670
Os.13875.1.S1_at--885--7311Chr06:27658243..27658267 (25 bp)
GTGCTCCATTTGAAATTCAGCTCTT
LOC_Os06g45670
Os.13875.1.S1_at--565--3391Chr06:27658226..27658250 (25 bp)
CAGCTCTTGATTTGCTTATCATCTG
LOC_Os06g45670
Os.13875.1.S1_at--292--6611Chr06:27658123..27658147 (25 bp)
GATTGTGGGTTTGTTTATCTTCTGA
LOC_Os06g45670
Os.13875.1.S1_at--364--1611Chr06:27658082..27658106 (25 bp)
AGCTGCATGAAACGTGATCCACCCG
LOC_Os06g45670
Target Sequence 
GATGGCAAACACTGATCAATCCCCTAACTGCTGGATTTCAAGAAACTATGCAGCAACTCACCATCATGACAATGAGCCAT
CTCGCCTCTCCTACCACATTATATTATTCTGGATAGAGGAGTCCCAAGGAATGTAATAAGCTGAAACATTTTTCTTGCAA
ATCAGACATGAAAATTTTGTAGTGTCCTGATCATTCCGTTTGTGCTCCATTTGAAATTCAGCTCTTGATTTGCTTATCAT
CTGAATACAGGTGGAGGATTGGGTTTGTTTAAACTTTGATTAAGTGACAGTGACTTGATTGTATTGAGATTGCAGCTCAG
GGATTGTGGGTTTGTTTATCTTCTGAATTCAATTCTGGAGATAGCTGCATGAAACGTGATCCACCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis