Browse Element(s) Details


OsAffx.23523.1.S1_at

Description tigr:9638.m02260
TID=OsAffx.23523.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2649011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26440OsAffx.30544.1.S1_at10/1110+13433516..13434241hypothetical protein
LOC_Os10g26450NANA10+13434854..13435234hypothetical protein
LOC_Os10g26460NANA10+13442381..13442764hypothetical protein
LOC_Os10g26470Os.53224.1.S1_at11/1110+13447368..13453588sucrose transporter 1, putative, expressed
LOC_Os10g26470Os.46781.1.S1_at11/1110+13447368..13453588sucrose transporter 1, putative, expressed
LOC_Os10g26480OsAffx.30545.1.S1_at11/1110+13454423..13455100hypothetical protein
LOC_Os10g26480OsAffx.30633.1.S1_at1/1110+13454423..13455100hypothetical protein
LOC_Os10g26490OsAffx.23523.1.S1_at11/1110+13458065..13461532hypothetical protein
LOC_Os10g26490Os.45422.1.S1_x_at2/1110+13458065..13461532hypothetical protein
LOC_Os10g26500OsAffx.18415.1.S1_x_at11/1110+13473516..13474789HAHB-1, putative
LOC_Os10g26510OsAffx.6772.1.S1_at11/1110+13480599..13482092hypothetical protein
LOC_Os10g26510Os.16463.1.S1_at2/1110+13480599..13482092hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23523.1.S1_at--238--311Chr10:13460959..13460983 (25 bp)
ATACCACTGCGGCATTGGCATTAGG
LOC_Os10g26490
OsAffx.23523.1.S1_at--163--6731Chr10:13460988..13461012 (25 bp)
GTTAATCACGAGATTCGGCGGCCAT
LOC_Os10g26490
OsAffx.23523.1.S1_at--1062--6571Chr10:13460999..13461023 (25 bp)
GATTCGGCGGCCATTGATTTCCTAC
LOC_Os10g26490
OsAffx.23523.1.S1_at--767--10771Chr10:13461012..13461036 (25 bp)
TTGATTTCCTACGTTGCTTGCATAT
LOC_Os10g26490
OsAffx.23523.1.S1_at--702--2092Chr10:13461048..13461072 (25 bp)
ACATGCTTGCATGGAAACCTAGGAA
LOC_Os10g26490
OsAffx.23523.1.S1_at--91--2311Chr10:13461077..13461101 (25 bp)
AAAGGCAAGGCAGCTCAGGATGAAA
LOC_Os10g26490
OsAffx.23523.1.S1_at--555--191Chr10:13461102..13461126 (25 bp)
ATTTCTTGCCATGAGCAGTGCGCAC
LOC_Os10g26490
OsAffx.23523.1.S1_at--877--5951Chr10:13461324..13461348 (25 bp)
GAGCAAGGTATGTCGAGCGCCACAC
LOC_Os10g26490
OsAffx.23523.1.S1_at--995--5871Chr10:13461338..13461362 (25 bp)
GAGCGCCACACTTCGCTATACCGAG
LOC_Os10g26490
OsAffx.23523.1.S1_at--1105--2131Chr10:13461419..13461443 (25 bp)
ACAGAGTCTCTCAACGAACGGCGGT
LOC_Os10g26490
OsAffx.23523.1.S1_at--247--4851Chr10:13461453..13461477 (25 bp)
GCTACAACACCGCAAACTCGGCGAA
LOC_Os10g26490
Target Sequence 
ATACCACTGCGGCATTGGCATTAGGGGATGTTAATCACGAGATTCGGCGGCCATTGATTTCCTACGTTGCTTGCATATGG
AAAGCAAATACATGCTTGCATGGAAACCTAGGAAATCAAAAGGCAAGGCAGCTCAGGATGAAAATTTCTTGCCATGAGCA
GTGCGCACACGCGGGAGGAGCAAGGTATGTCGAGCGCCACACTTCGCTATACCGAGCCCTCCGCCCCTGGTTGTCGGACC
CCAGGGCCGACAACCCGCCCTCGACGAACGCCACAGAGTCTCTCAACGAACGGCGGTGCGCACCCCGCTACAACACCGCA
AACTCGGCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis