Browse Element(s) Details


OsAffx.30543.1.S1_at

Description tigr:9638.m02254
TID=OsAffx.30543.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2643011/11Agenet domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26420Os.45976.1.S1_at5/1110+13398690..13406381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26420Os.45976.1.S1_x_at3/1110+13398690..13406381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26430OsAffx.30543.1.S1_at11/1110+13424960..13431969Agenet domain containing protein
LOC_Os10g26430OsAffx.30543.2.S1_x_at8/1110+13424960..13431969Agenet domain containing protein
LOC_Os10g26430OsAffx.30543.2.S1_at8/1110+13424960..13431969Agenet domain containing protein
LOC_Os10g26440OsAffx.30544.1.S1_at10/1110+13433516..13434241hypothetical protein
LOC_Os10g26450NANA10+13434854..13435234hypothetical protein
LOC_Os10g26460NANA10+13442381..13442764hypothetical protein
LOC_Os10g26470Os.53224.1.S1_at11/1110+13447368..13453588sucrose transporter 1, putative, expressed
LOC_Os10g26470Os.46781.1.S1_at11/1110+13447368..13453588sucrose transporter 1, putative, expressed
LOC_Os10g26480OsAffx.30545.1.S1_at11/1110+13454423..13455100hypothetical protein
LOC_Os10g26480OsAffx.30633.1.S1_at1/1110+13454423..13455100hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30543.1.S1_at--806--5871Chr10:13431377..13431397 (21 bp)
GAGCCGCTGTCTCCCAGAGCCAAGT
LOC_Os10g26430
OsAffx.30543.1.S1_at--996--7151Chr10:13431381..13431405 (25 bp)
GTCTCCCAGAGCCAAGTGGCCGTCG
LOC_Os10g26430
OsAffx.30543.1.S1_at--684--8411Chr10:13431398..13431422 (25 bp)
GGCCGTCGCGGCAGCTACCAGGTAC
LOC_Os10g26430
OsAffx.30543.1.S1_at--430--4691Chr10:13431405..13431429 (25 bp)
GCGGCAGCTACCAGGTACCGCTGCT
LOC_Os10g26430
OsAffx.30543.1.S1_at--236--3371Chr10:13431517..13431541 (25 bp)
CACCGGGTGCCAACGCGAGAAGGGA
LOC_Os10g26430
OsAffx.30543.1.S1_at--656--8291Chr10:13431556..13431580 (25 bp)
GGCTTCAGCTGTGGCGGCGCGAACG
LOC_Os10g26430
OsAffx.30543.1.S1_at--956--1891Chr10:13431593..13431617 (25 bp)
ACGTCCGCGCAGACATGCGAAGGGA
LOC_Os10g26430
OsAffx.30543.1.S1_at--1046--4091Chr10:13431681..13431705 (25 bp)
CGACTCGGCGCGCAGAAGGAGCTGG
LOC_Os10g26430
OsAffx.30543.1.S1_at--811--2691Chr10:13431795..13431819 (25 bp)
AAGCTCGCCAACTTGGCTCCGAGAG
LOC_Os10g26430
OsAffx.30543.1.S1_at--449--3271Chr10:13431803..13431827 (25 bp)
CAACTTGGCTCCGAGAGGCGGCGCT
LOC_Os10g26430
OsAffx.30543.1.S1_at--976--4671Chr10:13431911..13431935 (25 bp)
GCGGTCACGGCAACAACCTGCGGCA
LOC_Os10g26430
Target Sequence 
GAGCCGCTGTCTCCCAGAGCCAAGTGGCCGTCGCGGCAGCTACCAGGTACCGCTGCTCCCGCTGCTGCTCCCCACGCACA
GCGGAGTGCCGCCGGCCGTCGCCGTGATCGCGGGGTTCCGCTGCTGCTGCTCAGCCGTCGCCGCCACCGGGTGCCAACGC
GAGAAGGGAGGAGACGGCGCGGTGGCTTCAGCTGTGGCGGCGCGAACGACGGCGGTGGCGACGTCCGCGCAGACATGCGA
AGGGAGGGACGGCGCGGGCTCCAGCACATGGAAGGAGAAGGGGTGCCGAGGGAGCCGGGCGGTGGCGCCGACTCGGCGCG
CAGAAGGAGCTGGGGCGCGGAGGGATGGGGCGGCGGTGCCGGCTCCGGCGCTCAGAGAAAGGATGGAGGGGATGGCGGCG
CCGGCTTGGCTCCCTCTCCTCCAAGCTCGCCAACTTGGCTCCGAGAGGCGGCGCTGTCGCCGGAAAGTGGCGGCAGATGG
GCTGGCCCAGCAGTGGAACTCGGTGGCGGTGATGCCCGAGCAGCAGCAGCGGAACCCCGCGGTCACGGCAACAACCTGCG
GCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30543.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis