Browse Element(s) Details


Os.5943.1.S1_at

Description gb:AK061124.1
DB_XREF= gi:32971142
TID=Os.5943.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023150J02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-G09, full insert sequence.
FL= gb:AK061124.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0415011/11cell death associated protein, putative, expressed
LOC_Os11g043601/11cell death associated protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04110Os.6654.1.S1_at11/1112+1718705..1725257Cytochrome P450 family protein
LOC_Os12g04110OsAffx.24379.1.S1_at1/1112+1718705..1725257Cytochrome P450 family protein
LOC_Os12g04120OsAffx.31572.1.S1_at8/1112+1726835..1729563phosphoglycerate mutase family protein
LOC_Os12g04130OsAffx.30812.1.S1_at11/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04130OsAffx.30812.1.S1_x_at11/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04130Os.56229.1.S1_at5/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04130OsAffx.30812.2.S1_x_at1/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04140Os.50916.1.S1_at1/1112+1738759..1739846cell death associated protein, putative, expressed
LOC_Os12g04150Os.5943.1.S1_at11/1112+1744258..1745535cell death associated protein, putative, expressed
LOC_Os12g04160OsAffx.19483.1.S1_s_at11/1112+1746276..1749056ribosomal protein L24 containing protein, expressed
LOC_Os12g04160OsAffx.19483.1.S1_at7/1112+1746276..1749056ribosomal protein L24 containing protein, expressed
LOC_Os12g04160Os.23431.1.A1_at3/1112+1746276..1749056ribosomal protein L24 containing protein, expressed
LOC_Os12g04170Os.55139.1.S1_at3/1112+1750751..1752163phosphate translocator, putative, expressed
LOC_Os12g04170OsAffx.19217.1.S1_x_at2/1112+1750751..1752163phosphate translocator, putative, expressed
LOC_Os12g04180Os.12347.3.S1_at11/1112+1754561..1758696RNA recognition motif family protein, expressed
LOC_Os12g04180Os.12347.4.S1_x_at9/1112+1754561..1758696RNA recognition motif family protein, expressed
LOC_Os12g04200NANA12+1765096..1766963GRAS family transcription factor containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5943.1.S1_at--899--8511Chr12:1745245..1745269 (25 bp)
TGGAAACGGTGGTCAGCCACGGCCG
LOC_Os12g04150
Os.5943.1.S1_at--637--10691Chr12:1745390..1745414 (25 bp)
TTCCAAGTTTGAATCGGTGTCTGCT
LOC_Os12g04150
Os.5943.1.S1_at--710--3051Chr12:1745401..1745425 (25 bp)
AATCGGTGTCTGCTTCTATGTCTGA
LOC_Os12g04150
Os.5943.1.S1_at--267--7751Chr12:1745405..1745429 (25 bp)
GGTGTCTGCTTCTATGTCTGAATTT
LOC_Os12g04150
Os.5943.1.S1_at--382--4911Chr12:1745412..1745436 (25 bp)
GCTTCTATGTCTGAATTTGTGTCGA
LOC_Os12g04150
Os.5943.1.S1_at--670--5212Chr12:1745424..1745448 (25 bp)
GAATTTGTGTCGAAATCCTGTATCC
LOC_Os12g04150
Os.5943.1.S1_at--983--7451Chr12:1745430..1745454 (25 bp)
GTGTCGAAATCCTGTATCCATCTCA
LOC_Os12g04150
Os.5943.1.S1_at--155--6911Chr12:1745443..1745467 (25 bp)
GTATCCATCTCACCGTCACGTAGTA
LOC_Os12g04150
Os.5943.1.S1_at--307--3551Chr12:1745448..1745472 (25 bp)
CATCTCACCGTCACGTAGTACATGT
LOC_Os12g04150
Os.5943.1.S1_at--382--9871Chr12:1745474..1745498 (25 bp)
TACATCGCAATGTCTCTGTAGTTAA
LOC_Os12g04150
Os.5943.1.S1_at--1154--5171Chr12:1745480..1745504 (25 bp)
GCAATGTCTCTGTAGTTAAACAAGT
LOC_Os12g04150
Target Sequence 
TGGAAACGGTGGTCAGCCACGGCCGCGGGATCGGCCACGTGTTNTACCTCAACTGGTTCGCCGTGGAGTCCCACCCCGTC
NCGGCGGCGCGGGCGCGGGAGCTCGTCGACGCCGTCAANAGCTTNGTCGATAGCCNCTGAATCGATTCCAAGTTTGAATC
GGTGTCTGCTTCTATGTCTGAATTTGTGTCGAAATCCTGTATCCATCTCACCGTCACGTAGTACATGTNTACATCGCAAT
GTCTCTGTAGTTAAACAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5943.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis