Browse Element(s) Details


Os.6654.1.S1_at

Description gb:AU162389
DB_XREF= gi:11025788
DB_XREF=AU162389
CLONE=R0769
TID=Os.6654.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.6654 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T46083 (A.thaliana) T46083 hypothetical protein T20E23.120 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0411011/11Cytochrome P450 family protein
LOC_Os11g043002/11phosphoglycerate mutase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04040NANA12+1696203..1699494retrotransposon protein, putative, unclassified
LOC_Os12g04050NANA12+1700122..1705935retrotransposon protein, putative, unclassified
LOC_Os12g04060OsAffx.30810.1.S1_s_at11/1112+1707508..1710344transcription initiation factor IIE, putative, expressed
LOC_Os12g04070OsAffx.31571.1.S1_at11/1112+1711516..1711776hypothetical protein
LOC_Os12g04080Os.56203.1.S1_at11/1112+1712134..1713663Transferase family protein, expressed
LOC_Os12g04090OsAffx.30811.1.S1_at10/1112+1714125..1714743Zinc finger, C3HC4 type family protein
LOC_Os12g04100Os.54318.1.S1_at2/1112+1715190..1716740Cytochrome P450 family protein
LOC_Os12g04110Os.6654.1.S1_at11/1112+1718705..1725257Cytochrome P450 family protein
LOC_Os12g04110OsAffx.24379.1.S1_at1/1112+1718705..1725257Cytochrome P450 family protein
LOC_Os12g04120OsAffx.31572.1.S1_at8/1112+1726835..1729563phosphoglycerate mutase family protein
LOC_Os12g04130OsAffx.30812.1.S1_at11/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04130OsAffx.30812.1.S1_x_at11/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04130Os.56229.1.S1_at5/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04130OsAffx.30812.2.S1_x_at1/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04140Os.50916.1.S1_at1/1112+1738759..1739846cell death associated protein, putative, expressed
LOC_Os12g04150Os.5943.1.S1_at11/1112+1744258..1745535cell death associated protein, putative, expressed
LOC_Os12g04160OsAffx.19483.1.S1_s_at11/1112+1746276..1749056ribosomal protein L24 containing protein, expressed
LOC_Os12g04160OsAffx.19483.1.S1_at7/1112+1746276..1749056ribosomal protein L24 containing protein, expressed
LOC_Os12g04160Os.23431.1.A1_at3/1112+1746276..1749056ribosomal protein L24 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6654.1.S1_at--881--1391Chr12:1721752..1721776 (25 bp)
AGACGTCGGCCATCTCAGTGAAAAT
LOC_Os12g04110
Os.6654.1.S1_at--26--7351Chr12:1721735..1721759 (25 bp)
GTGAAAATGGCTTTCTGGAGAACGC
LOC_Os12g04110
Os.6654.1.S1_at--270--9471Chr12:1721722..1721746 (25 bp)
TCTGGAGAACGCATTTGGCGGTGAT
LOC_Os12g04110
Os.6654.1.S1_at--145--8491Chr12:1721707..1721731 (25 bp)
TGGCGGTGATGGAGCCTCTGCCTAA
LOC_Os12g04110
Os.6654.1.S1_at--411--3392Chr12:1721676..1721700 (25 bp)
CAGCGACTCATCTTGTCAGTGTATT
LOC_Os12g04110
Os.6654.1.S1_at--621--5712Chr12:1721672..1721696 (25 bp)
GACTCATCTTGTCAGTGTATTCAGT
LOC_Os12g04110
Os.6654.1.S1_at--867--7111Chr12:1721662..1721686 (25 bp)
GTCAGTGTATTCAGTGATTCAATCA
LOC_Os12g04110
Os.6654.1.S1_at--419--5691Chr12:1721632..1721656 (25 bp)
GACTTGAAGTCTGAAACATTTTTCG
LOC_Os12g04110
Os.6654.1.S1_at--476--10311Chr12:1721605..1721629 (25 bp)
TTTCTGATTGCTATTTTCTTCGGTG
LOC_Os12g04110
Os.6654.1.S1_at--575--6591Chr12:1721600..1721624 (25 bp)
GATTGCTATTTTCTTCGGTGTGATA
LOC_Os12g04110
Os.6654.1.S1_at--827--172Chr12:1721593..1721617 (25 bp)
ATTTTCTTCGGTGTGATAATCATGA
LOC_Os12g04110
Target Sequence 
AGACGTCGGCCATCTCAGTGAAAATGGCTTTCTGGAGAACGCATTTGGCGGTGATGGAGCCTCTGCCTAACANNNNNCAT
TNNNNNNNNNNNNNNNNCAGCGACTCATCTTGTCAGTGTATTCAGTGATTCAATCACCCNATGACTTGAAGTCTGAAACA
TTTTTCGNTTTTTCTGATTGCTATTTTCTTCGGTGTGATAATCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis