Browse Element(s) Details


Os.54318.1.S1_at

Description gb:AK103307.1
DB_XREF= gi:32988516
TID=Os.54318.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54318 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033125E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125E14, full insert sequence.
FL= gb:AK103307.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0429011/11Cytochrome P450 family protein, expressed
LOC_Os12g041002/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04280OsAffx.30811.2.S1_at11/1111+1751235..1751891Zinc finger, C3HC4 type family protein
LOC_Os11g04270OsAffx.6990.1.S1_at9/1111+1752627..1754453hypothetical protein
LOC_Os11g04260OsAffx.6989.1.S1_at11/1111+1755947..1757800hypothetical protein
LOC_Os11g04267OsAffx.6989.1.S1_at11/1111+1767459..1769312hypothetical protein
LOC_Os11g04274OsAffx.6990.1.S1_at10/1111+1770806..1772632hypothetical protein
LOC_Os11g04281OsAffx.30811.2.S1_at11/1111+1773368..1774024Zinc finger, C3HC4 type family protein
LOC_Os11g04290Os.54318.1.S1_at11/1111+1774408..1776334Cytochrome P450 family protein, expressed
LOC_Os11g04300Os.46781.1.S1_at2/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300Os.6654.1.S1_at2/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300OsAffx.10222.1.S1_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300Os.51841.1.S1_x_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300OsAffx.24379.1.S1_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300OsAffx.10222.1.S1_x_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300Os.45902.1.A1_x_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04310NANA11+1794376..1795923Cytochrome P450 family protein
LOC_Os11g04320OsAffx.31572.1.S1_at11/1111+1797789..1799337phosphoglycerate mutase family protein, expressed
LOC_Os11g04330Os.56229.1.S1_at11/1111+1800185..1801663Kelch motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54318.1.S1_at--959--5292Chr12:1716587..1716611 (25 bp)
GAAGTCCATAGTTGCAAACGTGCTT
LOC_Os12g04100
Os.54318.1.S1_at--895--2372Chr12:1716602..1716626 (25 bp)
AAACGTGCTTGAGGAGTTCGAGGTC
LOC_Os12g04100
Os.54318.1.S1_at--1052--851Chr11:1776052..1776076 (25 bp)
AGGCCACAAGGGAACTTTGCCGCTG
LOC_Os11g04290
Os.54318.1.S1_at--996--5471Chr11:1776063..1776087 (25 bp)
GAACTTTGCCGCTGAATGGTATAAT
LOC_Os11g04290
Os.54318.1.S1_at--294--2712Chr12:1716788..1716812 (25 bp)
AAGCTTCAAGTTTTGCTCTTTTCGT
NONE
Os.54318.1.S1_at--955--9552Chr12:1716804..1716828 (25 bp)
TCTTTTCGTTTTGAGCTTATGGGTT
NONE
Os.54318.1.S1_at--155--10251Chr11:1776151..1776175 (25 bp)
TTTGGTTGTTTTGCCCATTTTCCAT
LOC_Os11g04290
Os.54318.1.S1_at--32--3591Chr11:1776166..1776190 (25 bp)
CATTTTCCATTTCCTACTAGACTAC
LOC_Os11g04290
Os.54318.1.S1_at--681--10671Chr11:1776176..1776200 (25 bp)
TTCCTACTAGACTACAGCGGCAGAA
LOC_Os11g04290
Os.54318.1.S1_at--349--212Chr12:1716902..1716926 (25 bp)
ATTTGCCCTGGGTTGAATTGATGCC
NONE
Os.54318.1.S1_at--407--8012Chr12:1716942..1716966 (25 bp)
GGATGGCGTATCACTGTATTGTACA
NONE
Target Sequence 
GAAGTCCATAGTTGCAAACGTGCTTGAGGAGTTCGAGGTCGACGTGGTCAAGGACGTCGCCGGCGGCGGCGTGCCGGAGC
ACGTGCTCTCGGTGACGCTGAGGATGAAGGGTGGACTACCTGTGAAGATTAGGAGAAAGACTGAAGCTTACTAGAGAAGG
CCACAAGGGAACTTTGCCGCTGAATGGTATAATTAGTTAAGCTTCAAGTTTTGCTCTTTTCGTTTTGAGCTTATGGGTTA
AGAATAACGTTTGTGATTTGGTTGTTTTGCCCATTTTCCATTTCCTACTAGACTACAGCGGCAGAAAAATGATTTGCCCT
GGGTTGAATTGATGCCAGTTAATCAATAAAAGGATGGCGTATCACTGTATTGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis