Browse Element(s) Details


OsAffx.31572.1.S1_at

Description tigr:9639.m00344
TID=OsAffx.31572.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=phosphoglycerate mutase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0432011/11phosphoglycerate mutase family protein, expressed
LOC_Os12g041208/11phosphoglycerate mutase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04281OsAffx.30811.2.S1_at11/1111+1773368..1774024Zinc finger, C3HC4 type family protein
LOC_Os11g04290Os.54318.1.S1_at11/1111+1774408..1776334Cytochrome P450 family protein, expressed
LOC_Os11g04300Os.46781.1.S1_at2/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300Os.6654.1.S1_at2/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300OsAffx.10222.1.S1_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300Os.51841.1.S1_x_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300OsAffx.24379.1.S1_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300OsAffx.10222.1.S1_x_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300Os.45902.1.A1_x_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04310NANA11+1794376..1795923Cytochrome P450 family protein
LOC_Os11g04320OsAffx.31572.1.S1_at11/1111+1797789..1799337phosphoglycerate mutase family protein, expressed
LOC_Os11g04330Os.56229.1.S1_at11/1111+1800185..1801663Kelch motif family protein, expressed
LOC_Os11g04340OsAffx.6993.1.S1_at11/1111+1804515..1805027hypothetical protein
LOC_Os11g04350Os.50916.1.S1_at11/1111+1807130..1808535HSR203J, putative, expressed
LOC_Os11g04360OsAffx.19482.2.S1_x_at11/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04360OsAffx.19482.1.S1_at5/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04360Os.5943.1.S1_at1/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04370Os.23431.1.A1_at11/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04370OsAffx.19483.1.S1_s_at10/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04370OsAffx.19483.1.S1_at2/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04380Os.55139.1.S1_at11/1111+1817917..1819505phosphate translocator, putative, expressed
LOC_Os11g04380OsAffx.19217.1.S1_x_at2/1111+1817917..1819505phosphate translocator, putative, expressed
LOC_Os11g04390Os.12347.1.S1_x_at11/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04390Os.12347.4.S1_x_at10/1111+1820374..1827290RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31572.1.S1_at--563--2152Chr12:1727644..1727664 (21 bp)
ACAGCTTGCAATGTGTCCAACCTGG
LOC_Os12g04120
OsAffx.31572.1.S1_at--442--2632Chr12:1727543..1727564 (22 bp)
AACCTGGTGTTGAGTCCTGCACTGA
LOC_Os12g04120
OsAffx.31572.1.S1_at--327--1832Chr12:1727455..1727479 (25 bp)
ACGCTTACAAGGCTTTCTCATCTGA
LOC_Os12g04120
OsAffx.31572.1.S1_at--1100--7632Chr12:1727303..1727327 (25 bp)
GGGAGAGCCTTGACCAACTATCTGA
LOC_Os12g04120
OsAffx.31572.1.S1_at--621--3852Chr12:1727282..1727306 (25 bp)
CTGAGCGGTGTGTTTCGTACTTGAA
LOC_Os12g04120
OsAffx.31572.1.S1_at--250--5892Chr12:1727002..1727026 (25 bp)
GAGCGAGTGATTGTGGTCTCCCATG
LOC_Os12g04120
OsAffx.31572.1.S1_at--992--8052Chr12:1726923..1726947 (25 bp)
GGAGAATCCCAAACACTTCGATCTG
LOC_Os12g04120
OsAffx.31572.1.S1_at--685--472Chr12:1726903..1726927 (25 bp)
ATCTGCGTCTTCAACATTTCTGGCT
LOC_Os12g04120
OsAffx.31572.1.S1_at--405--5792Chr12:1726825..1726849 (25 bp)
GACGACTTCCCGTAGAATGCATTTG
NONE
OsAffx.31572.1.S1_at--99--8652Chr12:1726747..1726771 (25 bp)
TGGGCCATTTCATGAATCCGGGCAT
NONE
OsAffx.31572.1.S1_at--644--5252Chr12:1726734..1726758 (25 bp)
GAATCCGGGCATGAACTGTTATCTG
NONE
Target Sequence 
ACAGCTTGCAATGTGTCCAACCTGGTGTTGAGTCCTGCACTGAGAGAAAGGCACATGGGAGATCTCCATGGTTTGAAGTT
TGANGATGCCGTCAGAAGCAAGCCTGACGCTTACAAGGCTTTCTCATCTGAAGACAGAAGCCAAGAAATCCCTGGTGGCG
GGGAGAGCCTTGACCAACTATCTGAGCGGTGTGTTTCGTACTTGAACACAATAGCTGGGAAGCACAAGGGGGAGCGAGTG
ATTGTGGTCTCCCATGGAGCGAGCATCGAGGAACTCTGCAGACACGCCGATCCAACCAGCTCAGTTCGCAGGAGAATCCC
AAACACTTCGATCTGCGTCTTCAACATTTCTGGCTCCACCGGCCATTGGATTCTCGAGAGGTTTGGAGATGTCGCCCATC
TCAACGAAGACGACTTCCCGTAGAATGCATTTGGTGGCGATGAGGCCTCTACGTAGTGCCTCCAACCAACCAACCAACCG
GCTTCTTGGGCCATTTCATGAATCCGGGCATGAACTGTTATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis