Browse Element(s) Details


Os.12347.4.S1_x_at

Description gb:AK121845.1
DB_XREF= gi:37991468
TID=Os.12347.4
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12347 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 30848 putative RNA-binding protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101I21, full insert sequence.
FL= gb:AK121845.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0439010/11RNA recognition motif family protein, expressed
LOC_Os12g041809/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04310NANA11+1794376..1795923Cytochrome P450 family protein
LOC_Os11g04320OsAffx.31572.1.S1_at11/1111+1797789..1799337phosphoglycerate mutase family protein, expressed
LOC_Os11g04330Os.56229.1.S1_at11/1111+1800185..1801663Kelch motif family protein, expressed
LOC_Os11g04340OsAffx.6993.1.S1_at11/1111+1804515..1805027hypothetical protein
LOC_Os11g04350Os.50916.1.S1_at11/1111+1807130..1808535HSR203J, putative, expressed
LOC_Os11g04360OsAffx.19482.2.S1_x_at11/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04360OsAffx.19482.1.S1_at5/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04360Os.5943.1.S1_at1/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04370Os.23431.1.A1_at11/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04370OsAffx.19483.1.S1_s_at10/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04370OsAffx.19483.1.S1_at2/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04380Os.55139.1.S1_at11/1111+1817917..1819505phosphate translocator, putative, expressed
LOC_Os11g04380OsAffx.19217.1.S1_x_at2/1111+1817917..1819505phosphate translocator, putative, expressed
LOC_Os11g04390Os.12347.1.S1_x_at11/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04390Os.12347.4.S1_x_at10/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04400Os.53517.2.S1_at1/1111+1828395..1831070GRAS family transcription factor containing protein
LOC_Os11g04409Os.4757.1.S1_at1/1111+1836657..1836818NA
LOC_Os11g04420Os.6869.1.S1_s_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.6869.1.S1_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.1.A1_a_at9/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.2.A1_x_at6/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420OsAffx.30813.1.A1_at4/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S2_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.4757.1.S1_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S1_at1/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04430NANA11+1846679..1846891hypothetical protein
LOC_Os11g04440Os.52082.1.S1_at10/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04440Os.52539.1.S1_at10/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04440OsAffx.18660.1.S1_at8/1111+1848547..1852977Mitochondrial glycoprotein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12347.4.S1_x_at--873--5552Chr12:1757742..1757766 (25 bp)
GAAACCTCCTGCTGCTGATAAGAAG
LOC_Os12g04180
Os.12347.4.S1_x_at--456--7671NONE
GGGTACCACTACCTAGTTCAAATGG
NONE
Os.12347.4.S1_x_at--994--6892Chr12:1757837..1757861 (25 bp)
GTATCATGTCAGTACCAGGTGCCTA
LOC_Os12g04180
Os.12347.4.S1_x_at--123--10113Chr12:1757860..1757884 (25 bp)
TATGGTGCTGCTCCTGCTAGTACTG
LOC_Os12g04180
Os.12347.4.S1_x_at--771--9072Chr12:1757874..1758008 (25 bp)
TGCTAGTACTGCACAGCCTATGCTG
LOC_Os12g04180
Os.12347.4.S1_x_at--504--4452Chr12:1757999..1758023 (25 bp)
GCCTATGCTGTATGCTCCAAGAGCT
LOC_Os12g04180
Os.12347.4.S1_x_at--518--9972Chr12:1758055..1758079 (25 bp)
TACCGGATGGTCGTCTCGTATATGT
LOC_Os12g04180
Os.12347.4.S1_x_at--63--2492Chr12:1758231..1758255 (25 bp)
AACAGCCTGGTGGACAGTTGCCGCT
LOC_Os12g04180
Os.12347.4.S1_x_at--339--5172Chr12:1758274..1758298 (25 bp)
GCAAGCTGGACATCGTAGCGGCAGT
LOC_Os12g04180
Os.12347.4.S1_x_at--360--6311Chr11:1824824..1824848 (25 bp)
GATGACAACAGCAGTAGCCGCCACA
LOC_Os11g04390
Os.12347.4.S1_x_at--908--292Chr12:1758447..1758471 (25 bp)
ATAGCTGTAGCTACCACTTAGAAGA
LOC_Os12g04180
Target Sequence 
GAAACCTCCTGCTGCTGATAAGAAGGATGATAGGGTACCACTACCTAGTTCAAATGGAGCTCCATTGCTCCCGAGTTATC
CTCCACTTGGATATGGTATCATGTCAGTACCAGGTGCCTATGGTGCTGCTCCTGCTAGTACTGCACAGCCTATGCTGTAT
GCTCCAAGAGCTCCTCCAGGGGCAGCAATGGTTCCAATGATGTTACCGGATGGTCGTCTCGTATATGTTGTACAACAGCC
TGGTGGACAGTTGCCGCTGGCTTCGCCGCCGCCGCAGCAAGCTGGACATCGTAGCGGCAGTGGAGGACGTCATGGCGGCA
GTGGCAGCCGCTATGGCGGTGGTGGTGGCAGCTCCGGCAGTAGCAGGCCCGGTGCAAAACGGCAGAGAGGAGATGACAAC
AGCAGTAGCCGCCACAAAGGCCGGCGCCGCCCGTACTGATCTGATCAGCATAGCTGTAGCTACCACTTAGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12347.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis