Browse Element(s) Details


Os.52118.1.S1_at

Description gb:AK064762.1
DB_XREF= gi:32974780
TID=Os.52118.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52118 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-H04, full insert sequence.
FL= gb:AK064762.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0421011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04170Os.55139.1.S1_at3/1112+1750751..1752163phosphate translocator, putative, expressed
LOC_Os12g04170OsAffx.19217.1.S1_x_at2/1112+1750751..1752163phosphate translocator, putative, expressed
LOC_Os12g04180Os.12347.3.S1_at11/1112+1754561..1758696RNA recognition motif family protein, expressed
LOC_Os12g04180Os.12347.4.S1_x_at9/1112+1754561..1758696RNA recognition motif family protein, expressed
LOC_Os12g04200NANA12+1765096..1766963GRAS family transcription factor containing protein
LOC_Os12g04210Os.52118.1.S1_at11/1112+1775603..1776673expressed protein
LOC_Os12g04220OsAffx.18661.1.S1_at11/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220OsAffx.18661.2.S1_x_at8/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220OsAffx.24652.1.S1_x_at1/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220Os.38273.1.S1_at1/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04230OsAffx.18662.1.S1_at11/1112+1789093..1790190hypothetical protein
LOC_Os12g04240Os.10842.1.S1_at11/1112+1793279..1796384EF hand family protein, expressed
LOC_Os12g04240Os.10842.1.S1_x_at11/1112+1793279..1796384EF hand family protein, expressed
LOC_Os12g04250NANA12+1798483..1799978retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52118.1.S1_at--415--6751Chr12:1776145..1776169 (25 bp)
GTTCAGGTGATGTTTCTTCATTCAT
LOC_Os12g04210
Os.52118.1.S1_at--1012--7391Chr12:1776002..1776026 (25 bp)
GTGATGCGCGCAGTGGGCTCATAAA
LOC_Os12g04210
Os.52118.1.S1_at--42--8311Chr12:1775987..1776011 (25 bp)
GGCTCATAAACTTGGAGTTCCTCCA
LOC_Os12g04210
Os.52118.1.S1_at--374--851Chr12:1775936..1775960 (25 bp)
ATGGCATTTTGGTGGAGCTCTGTAA
LOC_Os12g04210
Os.52118.1.S1_at--778--1551Chr12:1775921..1775945 (25 bp)
AGCTCTGTAATTCTAGTGACCGGTA
LOC_Os12g04210
Os.52118.1.S1_at--125--6011Chr12:1775866..1775890 (25 bp)
GAGAGCCTATGCCTTCCAGGAAATT
LOC_Os12g04210
Os.52118.1.S1_at--193--7511Chr12:1775785..1775809 (25 bp)
GTGGTTTACTGTTCTAACGCGCTGA
LOC_Os12g04210
Os.52118.1.S1_at--245--2611Chr12:1775770..1775794 (25 bp)
AACGCGCTGATTGTTGATTACATTG
LOC_Os12g04210
Os.52118.1.S1_at--1045--6891Chr12:1775663..1775687 (25 bp)
GTATCTGTCCTTGTTATTAACTCCA
LOC_Os12g04210
Os.52118.1.S1_at--763--9811Chr12:1775646..1775670 (25 bp)
TAACTCCATGTTAAGCCGCAGGGTC
LOC_Os12g04210
Os.52118.1.S1_at--857--4511Chr12:1775632..1775656 (25 bp)
GCCGCAGGGTCTTCATTTGCTAGAA
LOC_Os12g04210
Target Sequence 
GTTCAGGTGATGTTTCTTCATTCATGTGATTTTAGGGGCTGTTTGGTTCTTAACTAACATTGCCAAGGCTAAGGAGGTGT
GGCAGCCTAAAGTACGGTGTGGCAAGTTGAAGCAATGAACCAAACACAATGTTTGTGGATATTGTGATGCGCGCAGTGGG
CTCATAAACTTGGAGTTCCTCCAAGAAATCTGGAAAAACAAGCACTTTCATGGCATTTTGGTGGAGCTCTGTAATTCTAG
TGACCGGTAGAAAAAAAATTAGCACATGATCAATTTCAGGAGAGCCTATGCCTTCCAGGAAATTCAGTACCACCTACCTT
TTCTTTCTACAAAAGTAGAGGAACATGCGTATATTTTTTTGTGGTTTACTGTTCTAACGCGCTGATTGTTGATTACATTG
TCTTACAACATAGTATCTTGGTAGACTGAAAATCTATTACTATGTATTATTTTCCTACAGTCTTGTCATGACAGTGAACC
AAGTATCTGTCCTTGTTATTAACTCCATGTTAAGCCGCAGGGTCTTCATTTGCTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis