Browse Element(s) Details


OsAffx.26915.1.S1_at

Description tigr:9633.m01409
TID=OsAffx.26915.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1587010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15820Os.38764.1.S1_x_at11/115+8914171..8917029retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15820OsAffx.31813.1.S1_x_at6/115+8914171..8917029retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15820Os.54151.1.S1_x_at4/115+8914171..8917029retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15820Os.46610.1.S1_x_at4/115+8914171..8917029retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15830OsAffx.3496.1.S1_x_at2/115+8915827..8917045retrotransposon protein, putative, unclassified
LOC_Os05g15830OsAffx.28492.1.S1_at1/115+8915827..8917045retrotransposon protein, putative, unclassified
LOC_Os05g15840OsAffx.18229.1.S1_x_at1/115+8917883..8922376retrotransposon protein, putative, unclassified
LOC_Os05g15850OsAffx.26914.1.S1_at11/115+8927584..8928656Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15860NANA5+8931006..8933564retrotransposon protein, putative, unclassified
LOC_Os05g15870OsAffx.26915.1.S1_at10/115+8934595..8937329hypothetical protein
LOC_Os05g15880Os.53670.1.S1_at11/115+8938717..8939867Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15890Os.10835.1.S1_at11/115+8945423..8952609helicase, putative, expressed
LOC_Os05g15900OsAffx.4351.1.S1_at11/115+8953030..8953676hypothetical protein
LOC_Os05g15910OsAffx.14715.1.S1_at10/115+8954254..8956660hypothetical protein
LOC_Os05g15920NANA5+8961095..8962226Xylanase inhibitor protein 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26915.1.S1_at--207--2211Chr05:8937261..8937285 (25 bp)
ACAACTGCACCGAGATGACACGTTA
LOC_Os05g15870
OsAffx.26915.1.S1_at--1139--5611Chr05:8937245..8937269 (25 bp)
GACACGTTAAACCTGAGCTACCATA
LOC_Os05g15870
OsAffx.26915.1.S1_at--627--4851Chr05:8937229..8937253 (25 bp)
GCTACCATACAGAAGGCTCGTTCCA
LOC_Os05g15870
OsAffx.26915.1.S1_at--178--5771Chr05:8937200..8937224 (25 bp)
GACGAAGCCTTTTCACTAGCTAGCA
LOC_Os05g15870
OsAffx.26915.1.S1_at--618--9992Chr05:8937184..8937208 (25 bp)
TAGCTAGCAGAGGAGTGCCCTCCAA
LOC_Os05g15870
OsAffx.26915.1.S1_at--406--6211Chr05:8937159..8937178 (20 bp)
GAGGCTCAAACGTTGTGCAGTGCAC
LOC_Os05g15870
OsAffx.26915.1.S1_at--468--4831Chr05:8935758..8935782 (25 bp)
GCTCAGCGGTTGAGGCTATCGGCAA
LOC_Os05g15870
OsAffx.26915.1.S1_at--643--5271NONE
GAATGAACTTAGCAGGCCTTACTCC
NONE
OsAffx.26915.1.S1_at--342--3371Chr05:8934833..8934857 (25 bp)
CACCGGCAAGCCTGCGACAGATAAA
LOC_Os05g15870
OsAffx.26915.1.S1_at--770--6211Chr05:8934786..8934810 (25 bp)
GAGGCTGGCAAAGGGCTTCTCACGA
LOC_Os05g15870
OsAffx.26915.1.S1_at--792--5131Chr05:8934674..8934698 (25 bp)
GCAAAGGACAGATTGGCCGCTGCCG
LOC_Os05g15870
Target Sequence 
ACAACTGCACCGAGATGACACGTTAAACCTGAGCTACCATACAGAAGGCTCGTTCCAATATGACGAAGCCTTTTCACTAG
CTAGCAGAGGAGTGCCCTCCAAGGCCCGAGGCTCAAACGTTGTGCAGTGCACGGCTGGTGAAGACGGGCACATGGAGGCT
CTTGGGGTACTACATGCAAGGAGCTCAGCGGTTGAGGCTATCGGCAAGGTGACGGCAGATGGAAGAAGTTGTCCTGTGGT
GGAACTCAGGGCGTCGGGGACTAAAACCAAGCATGGGAATGAACTTAGCAGGCCTTACTCCCTTGGCCTCGAGATGGCGT
GGGCACCGGCAAGCCTGCGACAGATAAATGGGATAGGGCAGGGTGTTGCAGAGGCTGGCAAAGGGCTTCTCACGAGGTCC
CGAGGTAGGCGGCCTTTCTCTCGTCCACATTCGAGTCAAAGACGAGGCATTCTTGGGACTTGGGAGCAAGAAATCATGGG
CGGCAAAGGACAGATTGGCCGCTGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis