Browse Element(s) Details


OsAffx.24430.1.S1_at

Description tigr:9630.m02470
TID=OsAffx.24430.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2623011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26190Os.26886.1.S1_x_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.26886.2.S1_s_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.26886.6.S1_s_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.26148.1.S1_at6/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.26148.1.S1_x_at5/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.16467.1.S1_at3/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.52395.1.S1_x_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.16244.1.S1_x_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.11944.1.S2_s_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.51123.1.S1_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.49954.1.S1_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26200OsAffx.2758.1.S1_at11/112+15385454..15388101hypothetical protein
LOC_Os02g26210Os.47445.1.S1_at10/112+15391615..15392735flowering promoting factor-like 1, putative, expressed
LOC_Os02g26220NANA2+15398031..15398381hypothetical protein
LOC_Os02g26230OsAffx.24430.1.S1_at11/112+15401669..15404723expressed protein
LOC_Os02g26230OsAffx.3301.1.S1_at1/112+15401669..15404723expressed protein
LOC_Os02g26240OsAffx.30013.5.S1_x_at2/112+15409428..15412239retrotransposon protein, putative, unclassified
LOC_Os02g26240Os.56292.1.S1_at1/112+15409428..15412239retrotransposon protein, putative, unclassified
LOC_Os02g26240Os.56292.1.S1_x_at1/112+15409428..15412239retrotransposon protein, putative, unclassified
LOC_Os02g26250OsAffx.422.1.S1_at1/112+15414849..15415337retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g26260NANA2+15416714..15416974hypothetical protein
LOC_Os02g26270NANA2+15419622..15423088retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g26280OsAffx.24431.1.S1_at9/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.31892.1.S1_x_at3/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.31892.3.S1_at2/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.31892.5.S1_x_at1/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.20733.1.S1_x_at1/112+15423739..15429165hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24430.1.S1_at--381--7431Chr02:15404094..15404118 (25 bp)
GTGTAGTCGGGCTCCTTCAAGAGAA
LOC_Os02g26230
OsAffx.24430.1.S1_at--564--5251Chr02:15404187..15404211 (25 bp)
GAATCCTCGACCTTTGTAGATCTCA
LOC_Os02g26230
OsAffx.24430.1.S1_at--686--2331Chr02:15404211..15404235 (25 bp)
AAAGATGCCAACACCGAGCGAGATC
LOC_Os02g26230
OsAffx.24430.1.S1_at--327--531Chr02:15404233..15404257 (25 bp)
ATCGACAGGTCGTCTTTTGGAGGAC
LOC_Os02g26230
OsAffx.24430.1.S1_at--491--7911Chr02:15404267..15404291 (25 bp)
GGTTGCAGAGCTCGAACGATCCGTC
LOC_Os02g26230
OsAffx.24430.1.S1_at--390--1031Chr02:15404338..15404362 (25 bp)
AGGTCTGGCTGAACTCGTACTTGAA
LOC_Os02g26230
OsAffx.24430.1.S1_at--1099--8871Chr02:15404380..15404404 (25 bp)
TGATGGAAATCTGCCGCCAACTCAA
LOC_Os02g26230
OsAffx.24430.1.S1_at--898--1851Chr02:15404430..15404454 (25 bp)
ACGACTGTGGGCTACTTATCTTGGA
LOC_Os02g26230
OsAffx.24430.1.S1_at--389--2991Chr02:15404585..15404609 (25 bp)
AATGAACCTCGGGTTCCTGCATGAT
LOC_Os02g26230
OsAffx.24430.1.S1_at--512--9051Chr02:15404602..15404626 (25 bp)
TGCATGATGGGTTCCGTTGTTCGCA
LOC_Os02g26230
OsAffx.24430.1.S1_at--278--2331Chr02:15404640..15404664 (25 bp)
AAAGTCGATCAGTTGGCGCGTTCCT
LOC_Os02g26230
Target Sequence 
GTGTAGTCGGGCTCCTTCAAGAGAACTCAGAGGCAAATTCCACTGAATCCTCGACCTTTGTAGATCTCAAAGATGCCAAC
ACCGAGCGAGATCGACAGGTCGTCTTTTGGAGGACGAAGTTCGAGGTTGCAGAGCTCGAACGATCCGTCGTAATCGTGAA
GAAGGACCAGGCCATCGAGACACTTCGAGGTTGCGAGGTCTGGCTGAACTCGTACTTGAAGAGCTGCTGTAGCGCTATGA
TGGAAATCTGCCGCCAACTCAAGATCGAGCGTGCAGAGCCTGAGGAGACGACTGTGGGCTACTTATCTTGGATGAGGGGT
GCGTGTGCCCAACTAGAGGGCGTTGGGCAACGAATCGACAACTGCCTAAAGGAGGAGTGTTGTCGTGCCAGCCGCTACGC
CGGGGGTCACATTCTCGCCTGCATCCGAGATCATCATCCACAAATGAACCTCGGGTTCCTGCATGATGGGTTCCGTTGTT
CGCAGTTATTGGCAAGCAAAGTCGATCAGTTGGCGCGTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24430.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis