Browse Element(s) Details


Os.47445.1.S1_at

Description gb:AK060911.1
DB_XREF= gi:32970929
TID=Os.47445.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47445 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-304-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F11, full insert sequence.
FL= gb:AK065150.1 gb:AK104536.1 gb:AK060911.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2621010/11flowering promoting factor-like 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26190Os.26886.1.S1_x_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.26886.2.S1_s_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.26886.6.S1_s_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.26148.1.S1_at6/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.26148.1.S1_x_at5/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.16467.1.S1_at3/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.52395.1.S1_x_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.16244.1.S1_x_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.11944.1.S2_s_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.51123.1.S1_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.49954.1.S1_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26200OsAffx.2758.1.S1_at11/112+15385454..15388101hypothetical protein
LOC_Os02g26210Os.47445.1.S1_at10/112+15391615..15392735flowering promoting factor-like 1, putative, expressed
LOC_Os02g26220NANA2+15398031..15398381hypothetical protein
LOC_Os02g26230OsAffx.24430.1.S1_at11/112+15401669..15404723expressed protein
LOC_Os02g26230OsAffx.3301.1.S1_at1/112+15401669..15404723expressed protein
LOC_Os02g26240OsAffx.30013.5.S1_x_at2/112+15409428..15412239retrotransposon protein, putative, unclassified
LOC_Os02g26240Os.56292.1.S1_at1/112+15409428..15412239retrotransposon protein, putative, unclassified
LOC_Os02g26240Os.56292.1.S1_x_at1/112+15409428..15412239retrotransposon protein, putative, unclassified
LOC_Os02g26250OsAffx.422.1.S1_at1/112+15414849..15415337retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g26260NANA2+15416714..15416974hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009911biological_processpositive regulation of flower development
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47445.1.S1_at--489--9391Chr02:15392122..15392146 (25 bp)
TCGATCAGACGACAGCTTATAGCTA
LOC_Os02g26210
Os.47445.1.S1_at--1005--9991Chr02:15392103..15392127 (25 bp)
TAGCTACAGCAGTCCACATGAGCTT
LOC_Os02g26210
Os.47445.1.S1_at--101--4931Chr02:15392082..15392106 (25 bp)
GCTTGCCTGCCTGCTATTATAAGAG
LOC_Os02g26210
Os.47445.1.S1_at--217--331Chr02:15392040..15392064 (25 bp)
ATACTGGTATGCGTGTGATCGATCA
LOC_Os02g26210
Os.47445.1.S1_at--873--9651Chr02:15391992..15392016 (25 bp)
TCAGCATGCACAGATCACTAGATCG
LOC_Os02g26210
Os.47445.1.S1_at--738--4471Chr02:15391933..15391957 (25 bp)
GCCGGCGTTGCAGCTTTTGGATTAG
LOC_Os02g26210
Os.47445.1.S1_at--1050--10231Chr02:15391918..15391942 (25 bp)
TTTGGATTAGATGTTGCGCCGGTGA
LOC_Os02g26210
Os.47445.1.S1_at--710--9151Chr02:15391904..15391928 (25 bp)
TGCGCCGGTGAGGACATTGCTATAG
LOC_Os02g26210
Os.47445.1.S1_at--356--8491Chr02:15391873..15391897 (25 bp)
TGGCTTTTGGGTATATTTCTGCATA
LOC_Os02g26210
Os.47445.1.S1_at--82--9891Chr02:15391692..15391716 (25 bp)
TACTCTCAACCGTACCTTTTTACTG
LOC_Os02g26210
Os.47445.1.S1_at--962--3111NONE
AATATTGATCGGTCTTTCTTTCCCT
NONE
Target Sequence 
TCGATCAGACGACAGCTTATAGCTACAGCAGTCCACATGAGCTTGCCTGCCTGCTATTATAAGAGTGTAAGTATGTATAT
ATATACTGGTATGCGTGTGATCGATCAAGGATCGATGTACACACAAATGATCAGCATGCACAGATCACTAGATCGAGATC
TATAGCTCGATCGATTTGGGGTTTCNCCTGCCGGCGTTGCAGCTTTTGGATTAGATGTTGCGCCGGTGAGGACATTGCTA
TAGGTTAATTGGCTTTTGGGTATATTTCTGCATAAATAATGCATCAATAGAGAGCACAACATGTGTATGCATACTTATAT
TTATATGTACACATGCATACATATATAAGTACATACATAGGGGCCGGGGGCAACATGCAGGTTGCAGAGATTCTGCCAGA
GATCAAGCAGAAAGGGGATCGCCGATGCCCTACTCTCAACCGTACCTTTTTACTGTTTAATTTGGAATAATTTGGATTGT
CTCAATACAAATTATGTACCAGTTTTTTCACATATGATTTGCACGACATTTTAAATATTGTAATCTGTACACATAATATT
GATCGGTCTTTCTTTCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis