Browse Element(s) Details


Os.11944.1.S2_s_at

Description gb:AK058899.1
DB_XREF= gi:32968917
TID=Os.11944.1
CNT=53
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.11944 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) DRE binding factor 2 (DBF2) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-A04, full insert sequence.
FL= gb:AY305028.1 gb:AK070758.1 gb:AK058899.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2035011/11AP2 domain containing protein, expressed
LOC_Os02g261901/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20320OsAffx.6693.1.S1_at1/119+12189874..12192474DnaJ domain containing protein
LOC_Os09g20320Os.51841.1.S1_x_at1/119+12189874..12192474DnaJ domain containing protein
LOC_Os09g20330OsAffx.17797.1.S1_at11/119+12195140..12196682Annexin family protein
LOC_Os09g20340OsAffx.6341.1.S1_at11/119+12202635..12207342hypothetical protein
LOC_Os09g20350Os.11944.1.S1_at11/119+12215432..12217337AP2 domain containing protein, expressed
LOC_Os09g20350Os.11944.1.S2_s_at11/119+12215432..12217337AP2 domain containing protein, expressed
LOC_Os09g20360OsAffx.6342.1.S1_at9/119+12219214..12221523hypothetical protein
LOC_Os09g20370OsAffx.6343.1.S1_at11/119+12227336..12228583hypothetical protein
LOC_Os09g20380NANA9+12239307..12242725transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11944.1.S2_s_at--849--1691Chr09:12216846..12216870 (25 bp)
ACCACTTCTTGGCTAGTACTCACGC
LOC_Os09g20350
Os.11944.1.S2_s_at--156--7011Chr09:12216861..12216885 (25 bp)
GTACTCACGCCGTCGTTAGCCTAAT
LOC_Os09g20350
Os.11944.1.S2_s_at--34--4213Chr09:12216900..12216924 (25 bp)
CCGCCGTGCAGATGGGATTTTAGAC
LOC_Os09g20350
Os.11944.1.S2_s_at--1055--7931Chr09:12216914..12216938 (25 bp)
GGATTTTAGACATTCTGCACCGCAC
LOC_Os09g20350
Os.11944.1.S2_s_at--676--5751Chr09:12216940..12216964 (25 bp)
GACGGGCATGGATTAGCAGTTTTAT
LOC_Os09g20350
Os.11944.1.S2_s_at--482--5031Chr09:12216955..12216979 (25 bp)
GCAGTTTTATAGTCCCTAATCCTTT
LOC_Os09g20350
Os.11944.1.S2_s_at--1002--8671Chr09:12216994..12217018 (25 bp)
TGTGTACGTAGATCGATCTCTCTCC
LOC_Os09g20350
Os.11944.1.S2_s_at--979--7511Chr09:12217124..12217148 (25 bp)
GTGGCCGGTCACTGGTCGGTTACTC
LOC_Os09g20350
Os.11944.1.S2_s_at--654--8471Chr09:12217155..12217179 (25 bp)
TGGCGTCCATTGCTCTTCTAAAGTC
LOC_Os09g20350
Os.11944.1.S2_s_at--46--7191Chr09:12217177..12217201 (25 bp)
GTCTGTTATTACCTTCTACTGCTGA
LOC_Os09g20350
Os.11944.1.S2_s_at--444--3731Chr09:12217192..12217216 (25 bp)
CTACTGCTGATCTTACAGGTTGTAA
LOC_Os09g20350
Target Sequence 
ACCACTTCTTGGCTAGTACTCACGCCGTCGTTAGCCTAATCGTCGCCGCCGCCGCCGCCGTGCAGATGGGATTTTAGACA
TTCTGCACCGCACGGACGGGCATGGATTAGCAGTTTTATAGTCCCTAATCCTTTTGGTTTGGTTCGTTTGTGTACGTAGA
TCGATCTCTCTCCGGACTTGTTTCCTCTGTAGATGCTAGGGTTGGTTGGTGTTCTTCCTCAACCGGAGACGCCGATGCTA
CCGGCAGCCGGCGTTTTTGTGTCCGGCGTGCGTCTCCGGTGGCCGGTCACTGGTCGGTTACTCCGGCCGTGGCGTCCATT
GCTCTTCTAAAGTCTGTTATTACCTTCTACTGCTGATCTTACAGGTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11944.1.S2_s_at     

Putative homologies in rice

Putative homologies in arabidopsis