Browse Element(s) Details


OsAffx.17797.1.S1_at

Description tigr:9637.m01732
TID=OsAffx.17797.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY085713 annexin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2033011/11Annexin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20284Os.52808.1.S1_at11/119+12165726..12175967Polyamine oxidase precursor, putative, expressed
LOC_Os09g20300NANA9+12177514..12179364retrotransposon protein, putative, unclassified
LOC_Os09g20310NANA9+12188700..12189562hypothetical protein
LOC_Os09g20320OsAffx.6693.1.S1_at1/119+12189874..12192474DnaJ domain containing protein
LOC_Os09g20320Os.51841.1.S1_x_at1/119+12189874..12192474DnaJ domain containing protein
LOC_Os09g20330OsAffx.17797.1.S1_at11/119+12195140..12196682Annexin family protein
LOC_Os09g20340OsAffx.6341.1.S1_at11/119+12202635..12207342hypothetical protein
LOC_Os09g20350Os.11944.1.S1_at11/119+12215432..12217337AP2 domain containing protein, expressed
LOC_Os09g20350Os.11944.1.S2_s_at11/119+12215432..12217337AP2 domain containing protein, expressed
LOC_Os09g20360OsAffx.6342.1.S1_at9/119+12219214..12221523hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0015774biological_processpolysaccharide transport
GO:0009928cellular_componentcell surface (sensu Magnoliophyta)
GO:0005509molecular_functioncalcium ion binding
GO:0005544molecular_functioncalcium-dependent phospholipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17797.1.S1_at--157--9711Chr09:12196011..12196111 (25 bp)
TCAACGAGGTTCTTCTCGCGTTCTT
LOC_Os09g20330
OsAffx.17797.1.S1_at--643--6731Chr09:12196095..12196119 (25 bp)
GTTCTTCTCGCGTTCTTGGGATCGA
LOC_Os09g20330
OsAffx.17797.1.S1_at--615--10591Chr09:12196099..12196123 (25 bp)
TTCTCGCGTTCTTGGGATCGAGCGG
LOC_Os09g20330
OsAffx.17797.1.S1_at--19--1891Chr09:12196155..12196179 (25 bp)
ACGATGGCGATGTGCGACGCCAAGA
LOC_Os09g20330
OsAffx.17797.1.S1_at--837--8531Chr09:12196216..12196240 (25 bp)
TGGACCAGAGGAGCGTCCTGCAGCT
LOC_Os09g20330
OsAffx.17797.1.S1_at--998--9091Chr09:12196276..12196300 (25 bp)
TGCTCGCGTCGTACAGGCGGCTGTA
LOC_Os09g20330
OsAffx.17797.1.S1_at--166--8751Chr09:12196297..12196321 (25 bp)
TGTACGGGCAGGAGCTCGCGCGGGC
LOC_Os09g20330
OsAffx.17797.1.S1_at--297--9291Chr09:12196426..12196450 (25 bp)
TCCCCGAGAGGCACTTCGCGAGGGC
LOC_Os09g20330
OsAffx.17797.1.S1_at--883--4631Chr09:12196540..12196564 (25 bp)
GCGTTCGCGGCCAAGACCGGGTGGA
LOC_Os09g20330
OsAffx.17797.1.S1_at--721--3951Chr09:12196616..12196640 (25 bp)
CGGACGACGGCTTGACCGGCGACTT
LOC_Os09g20330
OsAffx.17797.1.S1_at--32--8931Chr09:12196628..12196652 (25 bp)
TGACCGGCGACTTGCTCGTGGAGTT
LOC_Os09g20330
Target Sequence 
TCAACGAGGTTCTTCTCGCGTTCTTGGGATCGAGCGGGAGCGGCTACCATGGCGGCCGGGTGGACGCGACGATGGCGATG
TGCGACGCCAAGACGCTGTACGAGGCGGTGGAGATCAGCGCGGCGCGGGTGGACCAGAGGAGCGTCCTGCAGCTGCTGCG
CCACCGGAGCGGCGACCAGCTCAGGGCGGTGCTCGCGTCGTACAGGCGGCTGTACGGGCAGGAGCTCGCGCGGGCGCTGA
AGAGGAAGGACGGCGACACCAGCGGCGGCGGCGGTGGCCGGCGAGGCGAGTCGTCGTCGTTCCCGGGCATCCTCCGCGCG
GCGCTGCGGTGCGCGCAGCTCCCCGAGAGGCACTTCGCGAGGGCGGTGCGCGCGGCGCTGGAGCGCGGCGAGGGAGGCGC
TGGTGCGGACCGTCGTGACGCGCGCGGGCGTCGACGTGCGCCGCGTCAACCAGGCGTTCGCGGCCAAGACCGGGTGGACG
CTGGAGAGCGTCGTCCGGAACGAGTTCGGCAGCGGCGGCACCGGGAAGTCGGACGACGGCTTGACCGGCGACTTGCTCGT
GGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis