Browse Element(s) Details


OsAffx.6341.1.S1_at

Description tigr:9637.m01733
TID=OsAffx.6341.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2034011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20300NANA9+12177514..12179364retrotransposon protein, putative, unclassified
LOC_Os09g20310NANA9+12188700..12189562hypothetical protein
LOC_Os09g20320OsAffx.6693.1.S1_at1/119+12189874..12192474DnaJ domain containing protein
LOC_Os09g20320Os.51841.1.S1_x_at1/119+12189874..12192474DnaJ domain containing protein
LOC_Os09g20330OsAffx.17797.1.S1_at11/119+12195140..12196682Annexin family protein
LOC_Os09g20340OsAffx.6341.1.S1_at11/119+12202635..12207342hypothetical protein
LOC_Os09g20350Os.11944.1.S1_at11/119+12215432..12217337AP2 domain containing protein, expressed
LOC_Os09g20350Os.11944.1.S2_s_at11/119+12215432..12217337AP2 domain containing protein, expressed
LOC_Os09g20360OsAffx.6342.1.S1_at9/119+12219214..12221523hypothetical protein
LOC_Os09g20370OsAffx.6343.1.S1_at11/119+12227336..12228583hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6341.1.S1_at--97--2251Chr09:12206783..12206807 (25 bp)
AAATTCACCGAGTTCAGCAGACCAT
LOC_Os09g20340
OsAffx.6341.1.S1_at--325--7171Chr09:12206809..12206833 (25 bp)
GTCTCGTCGTCGGATATCGTTTATG
LOC_Os09g20340
OsAffx.6341.1.S1_at--411--511Chr09:12206824..12206848 (25 bp)
ATCGTTTATGTCCTGAGATCTCCTC
LOC_Os09g20340
OsAffx.6341.1.S1_at--1159--2711Chr09:12206863..12206887 (25 bp)
AAGCAGCCCTTGGTGAACCTTGTCA
LOC_Os09g20340
OsAffx.6341.1.S1_at--561--1871Chr09:12206888..12206912 (25 bp)
ACGAGATGGGTTTCTTCTACTCCAG
LOC_Os09g20340
OsAffx.6341.1.S1_at--894--731Chr09:12207052..12207076 (25 bp)
ATGTTCGTGCTCCTTGATGACTGGT
LOC_Os09g20340
OsAffx.6341.1.S1_at--647--6311Chr09:12207067..12207091 (25 bp)
GATGACTGGTCCTCAGCAATCGCGT
LOC_Os09g20340
OsAffx.6341.1.S1_at--732--3031Chr09:12207084..12207108 (25 bp)
AATCGCGTCACTCCCGGGTGAAGAA
LOC_Os09g20340
OsAffx.6341.1.S1_at--582--9032Chr09:12207212..12207236 (25 bp)
TGCAGGCCGGTTTAGCAACCATGTT
LOC_Os09g20340
OsAffx.6341.1.S1_at--560--3251Chr09:12207227..12207251 (25 bp)
CAACCATGTTCGATCGGCTGTCAAA
LOC_Os09g20340
OsAffx.6341.1.S1_at--136--2491Chr09:12207258..12207282 (25 bp)
AACAGCCATGTCCAGCTTGTCTGAA
LOC_Os09g20340
Target Sequence 
AAATTCACCGAGTTCAGCAGACCATCGTCTCGTCGTCGGATATCGTTTATGTCCTGAGATCTCCTCGCGGCGAGCCGTAC
AAGCAGCCCTTGGTGAACCTTGTCAACGAGATGGGTTTCTTCTACTCCAGCTTGACGAATTGGATTGCTGCTTACAAATG
CTATGTGGATGGTCTCCACTCCTGGCTGCAGAAATGCGTGCTGCAACCTTACGATCACACCCGGGGAAGGAGGCTGACGC
TCTCGCCTCGCCGGCACCTTGCTCCTCCCATGTTCGTGCTCCTTGATGACTGGTCCTCAGCAATCGCGTCACTCCCGGGT
GAAGAAACCTTGGGCTCTATCAAGAACATCATGTCAGATCTCAAGAAAATGTTCAAGAATCATCAAGCAGAAGGTAACAA
ACCGGAGACTGGATCGAAGCTGGCAACCCTGCAGGCCGGTTTAGCAACCATGTTCGATCGGCTGTCAAAGTTTTCAACAG
CCATGTCCAGCTTGTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis