Browse Element(s) Details


Os.52808.1.S1_at

Description gb:AK069392.1
DB_XREF= gi:32979416
TID=Os.52808.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52808 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023014L10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014L10, full insert sequence.
FL= gb:AK069392.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2028411/11Polyamine oxidase precursor, putative, expressed
LOC_Os09g202605/11Polyamine oxidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20260Os.52808.1.S1_at5/119+12145316..12153366Polyamine oxidase precursor, putative, expressed
LOC_Os09g20270OsAffx.6340.1.S1_at11/119+12156204..12159315hypothetical protein
LOC_Os09g20270OsAffx.29033.1.S1_at1/119+12156204..12159315hypothetical protein
LOC_Os09g20284Os.52808.1.S1_at11/119+12165726..12175967Polyamine oxidase precursor, putative, expressed
LOC_Os09g20300NANA9+12177514..12179364retrotransposon protein, putative, unclassified
LOC_Os09g20310NANA9+12188700..12189562hypothetical protein
LOC_Os09g20320OsAffx.6693.1.S1_at1/119+12189874..12192474DnaJ domain containing protein
LOC_Os09g20320Os.51841.1.S1_x_at1/119+12189874..12192474DnaJ domain containing protein
LOC_Os09g20330OsAffx.17797.1.S1_at11/119+12195140..12196682Annexin family protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009911biological_processpositive regulation of flower development
GO:0016575biological_processhistone deacetylation
GO:0008131molecular_functionamine oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52808.1.S1_at--964--192Chr09:12166532..12166556 (25 bp)
ATATTCGTCAAGTTCCCCAAGAAAT
LOC_Os09g20284
Os.52808.1.S1_at--999--5192Chr09:12166345..12166369 (25 bp)
GCAATACCCGGATGCCAATGTGCTC
LOC_Os09g20284
Os.52808.1.S1_at--1078--3192Chr09:12166330..12166354 (25 bp)
CAATGTGCTCCTGGTGACGGTGACC
LOC_Os09g20284
Os.52808.1.S1_at--410--8891Chr09:12166238..12166262 (25 bp)
TGAGGAGCATGTTCCCTGACGAGGA
LOC_Os09g20284
Os.52808.1.S1_at--425--711Chr09:12166180..12166204 (25 bp)
ATGGTGGTCGGACAGGTTCTTCCAA
LOC_Os09g20284
Os.52808.1.S1_at--429--492Chr09:12166134..12166158 (25 bp)
ATCGGCGTCAGTCGCTACGAACATG
LOC_Os09g20284
Os.52808.1.S1_at--213--9951Chr09:12166122..12166143 (22 bp)
TACGAACATGACCAGCTCAGGGCGC
LOC_Os09g20284
Os.52808.1.S1_at--717--7631Chr09:12165936..12165960 (25 bp)
GGGAGAGTCTATTTCACCGGTGAGC
LOC_Os09g20284
Os.52808.1.S1_at--452--4612Chr09:12165905..12165929 (25 bp)
GCGAGCGCTACAATGGCTATGTCCA
LOC_Os09g20284
Os.52808.1.S1_at--17--851Chr09:12165881..12165905 (25 bp)
ATGGAGCTTATCTTGCAGGTATCTA
LOC_Os09g20284
Os.52808.1.S1_at--737--2251Chr09:12165784..12165808 (25 bp)
AAATACCTGCTCTAGTGATTGACGA
LOC_Os09g20284
Target Sequence 
ATATTCGTCAAGTTCCCCAAGAAATTCTGGCCCGAAGGGGCAGGGAGGGAGTTCTTCCTCTACGCGAGCACCAGGAGAGG
CTACTACGGAGTCTGGCAGGAGTTTGAGAAGCAATACCCGGATGCCAATGTGCTCCTGGTGACGGTGACCGACGAGGAGT
CGAGGCGGATCGAGCAGCAGCCGGACAGCCAGACCAAGGCAGAGATCATGGAGGTTGTGAGGAGCATGTTCCCTGACGAG
GACGTCCCCGACGCCACCGACATCCTCGTCCCGAGATGGTGGTCGGACAGGTTCTTCCAAGGCAGCTTCTCCAACTGGCC
CATCGGCGTCAGTCGCTACGAACATGACCAGCTCAGGGCGCCGGTTGGGAGAGTCTATTTCACCGGTGAGCACACGAGCG
AGCGCTACAATGGCTATGTCCATGGAGCTTATCTTGCAGGTATCTATGCCTAATTTGTTAGCCTATGTCTCTAATGTTAG
AGAGACCGGAGATGTAAACCATTTTTATTGTCTTAAAAAAATACCTGCTCTAGTGATTGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52808.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis