Browse Element(s) Details


OsAffx.6340.1.S1_at

Description tigr:9637.m01726
TID=OsAffx.6340.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2027011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20250Os.49985.1.S1_at1/119+12132094..12136417retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g20260Os.52808.1.S1_at5/119+12145316..12153366Polyamine oxidase precursor, putative, expressed
LOC_Os09g20270OsAffx.6340.1.S1_at11/119+12156204..12159315hypothetical protein
LOC_Os09g20270OsAffx.29033.1.S1_at1/119+12156204..12159315hypothetical protein
LOC_Os09g20284Os.52808.1.S1_at11/119+12165726..12175967Polyamine oxidase precursor, putative, expressed
LOC_Os09g20300NANA9+12177514..12179364retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6340.1.S1_at--810--331Chr09:12157919..12157943 (25 bp)
ATACATTGGACTGGTGGCCCACATT
LOC_Os09g20270
OsAffx.6340.1.S1_at--892--9351Chr09:12158445..12158469 (25 bp)
TCGCAAGCCAGTGCCGCAGATGGGA
LOC_Os09g20270
OsAffx.6340.1.S1_at--95--5791Chr09:12158686..12158710 (25 bp)
GACGACGCCGACACACGTTGCTGAT
LOC_Os09g20270
OsAffx.6340.1.S1_at--119--2191Chr09:12158696..12158720 (25 bp)
ACACACGTTGCTGATGACACCGACA
LOC_Os09g20270
OsAffx.6340.1.S1_at--450--5351Chr09:12159168..12159192 (25 bp)
GAAGTTGGATGAGCTCGTGCAGACT
LOC_Os09g20270
OsAffx.6340.1.S1_at--431--5911Chr09:12159178..12159202 (25 bp)
GAGCTCGTGCAGACTGATGAGGAAC
LOC_Os09g20270
OsAffx.6340.1.S1_at--486--6191Chr09:12159196..12159220 (25 bp)
GAGGAACTTGTCAAATTGGCCACTA
LOC_Os09g20270
OsAffx.6340.1.S1_at--1076--2231Chr09:12159208..12159232 (25 bp)
AAATTGGCCACTAACCCTCTTGCTG
LOC_Os09g20270
OsAffx.6340.1.S1_at--192--9591Chr09:12159225..12159249 (25 bp)
TCTTGCTGCACAACATGCCCTCTTG
LOC_Os09g20270
OsAffx.6340.1.S1_at--90--9591Chr09:12159245..12159269 (25 bp)
TCTTGCTGCGCGATACACCCTTGTC
LOC_Os09g20270
OsAffx.6340.1.S1_at--459--2171Chr09:12159259..12159283 (25 bp)
ACACCCTTGTCTCCTCACTTAATTT
LOC_Os09g20270
Target Sequence 
ATACATTGGACTGGTGGCCCACATTGCCACATCCACTGCCGCCACCGACAACGCCGTCGCAAGCCAGTGCCGCAGATGGG
AGGGTGATCTCGGGCCGCCGCCGTCCTTCCTCCCGCCAGATCTGGCGGAGGGAGAGCGCCTCCAGCCGGCCACTGCTCCT
CCCGCCGAACGCCGCCGCCGCCCCACGCTGCTACAGCGGAGGGGACGGCGCTGTCGGGCCGCCGCCGCCCTTCCTCCTGT
CGGATCTGGAGGAGGGAGGGCGCCTCCGGGCAGCCGCCGCTCCTCCTGCCGCACGCCGACGACGCCGACACACGTTGCTG
ATGACACCGACACCGACACCGCTGCTCCTCCCGCCGCTCTTCCTGCCGCCGGGAGAGGAGAAAGAGAGGACGAAGAGAAG
AGAAGAGGAGTAGTGGGCGAAGTGGTGAAGTTGGATGAGCTCGTGCAGACTGATGAGGAACTTGTCAAATTGGCCACTAA
CCCTCTTGCTGCACAACATGCCCTCTTGCTGCGCGATACACCCTTGTCTCCTCACTTAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis