Browse Element(s) Details


Os.49954.1.S1_at

Description gb:AK119427.1
DB_XREF= gi:37989050
TID=Os.49954.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49954 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-H09, full insert sequence.
FL= gb:AK119427.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3924011/11expressed protein
LOC_Os06g410801/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g261901/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39170NANA7+23461676..23466848retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39180OsAffx.16630.1.S1_at8/117+23469634..23470022hypothetical protein
LOC_Os07g39190Os.55665.1.S1_at11/117+23475602..23476621expressed protein
LOC_Os07g39200OsAffx.5575.1.S1_at10/117+23477145..23477603hypothetical protein
LOC_Os07g39210OsAffx.16631.1.S1_at11/117+23478203..23478930expressed protein
LOC_Os07g39220Os.54781.1.S1_at10/117+23482115..23483650BES1/BZR1 homolog protein 1, putative, expressed
LOC_Os07g39230OsAffx.7916.1.S1_at8/117+23484464..23488788retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39240Os.49954.1.S1_at11/117+23489983..23493339expressed protein
LOC_Os07g39250OsAffx.16632.1.S1_at11/117+23495385..23498593expressed protein
LOC_Os07g39260OsAffx.16633.1.S1_at11/117+23501607..23502170expressed protein
LOC_Os07g39270Os.23416.2.S1_at11/117+23505158..23507599Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os07g39270Os.23416.1.S1_x_at11/117+23505158..23507599Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os07g39270Os.23416.1.S1_at11/117+23505158..23507599Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os07g39280Os.47410.1.S1_at11/117+23510217..23513938expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49954.1.S1_at--878--7752Chr02:15380990..15381014 (25 bp)
GGTGTTCGTCTACTGCTCCAGCGCG
LOC_Os02g26190
Os.49954.1.S1_at--1094--4231Chr07:23490445..23490469 (25 bp)
CCGTCGAGCAGCACGTTGGGCTGAT
LOC_Os07g39240
Os.49954.1.S1_at--592--8851Chr07:23490424..23490448 (25 bp)
TGATGCAGGACATGTTCCTCCTCCC
LOC_Os07g39240
Os.49954.1.S1_at--289--3391Chr07:23490140..23490164 (25 bp)
CAGCGGTGGAACTACGCCATTGTCA
LOC_Os07g39240
Os.49954.1.S1_at--1131--3591Chr07:23490123..23490147 (25 bp)
CATTGTCAGTAGGATGGGCAACTCA
LOC_Os07g39240
Os.49954.1.S1_at--147--8011Chr07:23490112..23490136 (25 bp)
GGATGGGCAACTCATCACAACAGCA
LOC_Os07g39240
Os.49954.1.S1_at--98--5351Chr07:23490087..23490111 (25 bp)
GAAGTTGCATCACATCTTCTAATGC
LOC_Os07g39240
Os.49954.1.S1_at--19--8071Chr07:23490059..23490083 (25 bp)
GGAGACATCACTTCTTGGGCTATAT
LOC_Os07g39240
Os.49954.1.S1_at--891--671Chr07:23490034..23490058 (25 bp)
ATGAGCCTTAATGGGCCCAAAATTA
LOC_Os07g39240
Os.49954.1.S1_at--913--9911Chr07:23490011..23490035 (25 bp)
TACTGATGGGCCGTAATGAGCCGAA
LOC_Os07g39240
Os.49954.1.S1_at--1140--312Chr06:24542167..24542186 (20 bp)
ATACTGATGGGCCAACAGATTACAG
LOC_Os06g41080
Target Sequence 
GGTGTTCGTCTACTGCTCCAGCGCGCACCTGGCCCTGTTCGTGGTCGTCCTCGCGCTGATCAGCAGCCGCGACGCCACCG
TCGAGCAGCACGTTGGGCTGATGCAGGACATGTTCCTCCTCCCGCAGGTGATCGGCAACGCCGCGTGGAGCGTCAACTGC
AAGCCCCTCGCGGGGAGCTTCTACGTCGGCATCACCGCCGCGCGCCTGCTCCCGCGCGTGTACGACCTCGTGCGCCCCAC
GCCGGTGGCGGACGTGTTCTCCGACGACGTCCACGCGTCAGCGACAGCGAGCGCCATCAGCCGGGAGGGCTTCTTCCCCA
GGGCCGGCGACGTGGTGATGCCGCTCGCCGCCGTCTCGCTCGCTGGCGCGGTGTTCGTCCAGCAGCGGTGGAACTACGCC
ATTGTCAGTAGGATGGGCAACTCATCACAACAGCAGAAGTTGCATCACATCTTCTAATGCACAGGAGACATCACTTCTTG
GGCTATATATGAGCCTTAATGGGCCCAAAATTACTGATGGGCCGTAATGAGCCGAATAATACTGATGGGCCAACAGATTA
CAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis