Browse Element(s) Details


Os.55665.1.S1_at

Description gb:AK108520.1
DB_XREF= gi:32993729
TID=Os.55665.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-B03, full insert sequence.
FL= gb:AK108520.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3919011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39150OsAffx.32166.1218.S1_x_at9/117+23454664..23456106hypothetical protein
LOC_Os07g39170NANA7+23461676..23466848retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39180OsAffx.16630.1.S1_at8/117+23469634..23470022hypothetical protein
LOC_Os07g39190Os.55665.1.S1_at11/117+23475602..23476621expressed protein
LOC_Os07g39200OsAffx.5575.1.S1_at10/117+23477145..23477603hypothetical protein
LOC_Os07g39210OsAffx.16631.1.S1_at11/117+23478203..23478930expressed protein
LOC_Os07g39220Os.54781.1.S1_at10/117+23482115..23483650BES1/BZR1 homolog protein 1, putative, expressed
LOC_Os07g39230OsAffx.7916.1.S1_at8/117+23484464..23488788retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39240Os.49954.1.S1_at11/117+23489983..23493339expressed protein
LOC_Os07g39250OsAffx.16632.1.S1_at11/117+23495385..23498593expressed protein
LOC_Os07g39260OsAffx.16633.1.S1_at11/117+23501607..23502170expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55665.1.S1_at--530--891Chr07:23476060..23476084 (25 bp)
AGGCCGGCCTGCTAGAAGGTCAAGT
LOC_Os07g39190
Os.55665.1.S1_at--654--931Chr07:23475924..23475948 (25 bp)
AGGCAGAGACGCGAGCCCTGATCGT
LOC_Os07g39190
Os.55665.1.S1_at--260--3871Chr07:23475907..23475931 (25 bp)
CTGATCGTCCCGATGAGCTGGCGAA
LOC_Os07g39190
Os.55665.1.S1_at--492--5551Chr07:23475882..23475906 (25 bp)
GAAACGACGCTTGGATGGGCCTTGA
LOC_Os07g39190
Os.55665.1.S1_at--707--8431Chr07:23475865..23475889 (25 bp)
GGCCTTGAGCTGGATTATGGATGCA
LOC_Os07g39190
Os.55665.1.S1_at--942--5891Chr07:23475829..23475853 (25 bp)
GAGCTGAGCTGTATTTAGTAACACT
LOC_Os07g39190
Os.55665.1.S1_at--1145--4651Chr07:23475753..23475777 (25 bp)
GCGTGATAACGACCGCAGTTACCAT
LOC_Os07g39190
Os.55665.1.S1_at--380--4211Chr07:23475741..23475765 (25 bp)
CCGCAGTTACCATCCCTAGATAATA
LOC_Os07g39190
Os.55665.1.S1_at--801--4851Chr07:23475708..23475732 (25 bp)
GCTAGCAATACTGGTGAGCCACAAT
LOC_Os07g39190
Os.55665.1.S1_at--1150--5851Chr07:23475693..23475717 (25 bp)
GAGCCACAATCAGCAGTAACCCATG
LOC_Os07g39190
Os.55665.1.S1_at--926--7051Chr07:23475678..23475702 (25 bp)
GTAACCCATGTTCCAAATTGACCCT
LOC_Os07g39190
Target Sequence 
AGGCCGGCCTGCTAGAAGGTCAAGTCTGGAAGCGTTGTAACATCTTCAAGGGGTTGGAGGGGTTGGATAACTTGCAGGAT
GAGGTGAAGATGGAGGAGACAGTGAAAGAGGAGGAGGAGGAGGCGACAGGTTGCCGAGGCAGAGACGCGAGCCCTGATCG
TCCCGATGAGCTGGCGAAGAAACGACGCTTGGATGGGCCTTGAGCTGGATTATGGATGCAACCTGCCATTTGAGCTGAGC
TGTATTTAGTAACACTGTCAATTTTTACAACAGTAGAGAGATTCATTCAGTAACTAGTGATTGTTCTGCGTGATAACGAC
CGCAGTTACCATCCCTAGATAATACTAGTATAGCTAGCAATACTGGTGAGCCACAATCAGCAGTAACCCATGTTCCAAAT
TGACCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis