Browse Element(s) Details


Os.54781.1.S1_at

Description gb:AK106748.1
DB_XREF= gi:32991957
TID=Os.54781.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54781 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-C06, full insert sequence.
FL= gb:AK106748.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3922010/11BES1/BZR1 homolog protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39170NANA7+23461676..23466848retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39180OsAffx.16630.1.S1_at8/117+23469634..23470022hypothetical protein
LOC_Os07g39190Os.55665.1.S1_at11/117+23475602..23476621expressed protein
LOC_Os07g39200OsAffx.5575.1.S1_at10/117+23477145..23477603hypothetical protein
LOC_Os07g39210OsAffx.16631.1.S1_at11/117+23478203..23478930expressed protein
LOC_Os07g39220Os.54781.1.S1_at10/117+23482115..23483650BES1/BZR1 homolog protein 1, putative, expressed
LOC_Os07g39230OsAffx.7916.1.S1_at8/117+23484464..23488788retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39240Os.49954.1.S1_at11/117+23489983..23493339expressed protein
LOC_Os07g39250OsAffx.16632.1.S1_at11/117+23495385..23498593expressed protein
LOC_Os07g39260OsAffx.16633.1.S1_at11/117+23501607..23502170expressed protein
LOC_Os07g39270Os.23416.2.S1_at11/117+23505158..23507599Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os07g39270Os.23416.1.S1_x_at11/117+23505158..23507599Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os07g39270Os.23416.1.S1_at11/117+23505158..23507599Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016564molecular_functiontranscriptional repressor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54781.1.S1_at--528--7171Chr07:23482518..23482542 (25 bp)
GTCGGCGCGAAATGACGGCCATTAT
LOC_Os07g39220
Os.54781.1.S1_at--175--1311Chr07:23482480..23482504 (25 bp)
AGATGGTTCCTTTCGTGGACCTCGA
LOC_Os07g39220
Os.54781.1.S1_at--967--8531Chr07:23482465..23482489 (25 bp)
TGGACCTCGAGCACCAGCTGATCAT
LOC_Os07g39220
Os.54781.1.S1_at--1076--8831Chr07:23482407..23482431 (25 bp)
TGATCATGACTACGCATCGATGCTG
LOC_Os07g39220
Os.54781.1.S1_at--198--6351Chr07:23482389..23482413 (25 bp)
GATGCTGCGATTTGGGCGATTTCAT
LOC_Os07g39220
Os.54781.1.S1_at--380--4631Chr07:23482374..23482398 (25 bp)
GCGATTTCATTCTAGCCTTAGGTTA
LOC_Os07g39220
Os.54781.1.S1_at--433--1971Chr07:23482261..23482285 (25 bp)
ACTGTTCATCTCTGTGTTTCTTCTT
LOC_Os07g39220
Os.54781.1.S1_at--1060--7111Chr07:23482227..23482251 (25 bp)
GTCATGTGCATCTCCTCAAAATGTG
LOC_Os07g39220
Os.54781.1.S1_at--968--6751Chr07:23482149..23482173 (25 bp)
GTTCAACTTTATGGCATGATCGCTT
LOC_Os07g39220
Os.54781.1.S1_at--431--3511Chr07:23482135..23482159 (25 bp)
CATGATCGCTTTGACGTACCGTTAA
LOC_Os07g39220
Os.54781.1.S1_at--248--9951NONE
TACCGTTAAACCGTACAGTGAGCTC
NONE
Target Sequence 
GTCGGCGCGAAATGACGGCCATTATTGCCGAGCAAAAAAGATGGTTCCTTTCGTGGACCTCGAGCACCAGCTGATCATGG
TTGTTGTTAGATCAGTACTGGTCAATGTGTATGATCATGACTACGCATCGATGCTGCGATTTGGGCGATTTCATTCTAGC
CTTAGGTTAATCTTGTTGTTCAATTCATTCTTCCTGGACTTGGGAAAAAGGAAGCAGGGAAAAATTGTTCATCACGGCTG
ATTTNATTCACGGCTTCACTGTTCATCTCTGTGTTTCTTCTTCCCGTACCTGTCATGTGCATCTCCTCAAAATGTGTGAC
ATCTTAGCTTGTGAGTAGAGTGAGGTAAAAAATGCGGGTTGATGATGTTCAACTTTATGGCATGATCGCTTTGACGTACC
GTTAAACCGTACAGTGAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54781.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis