Browse Element(s) Details


Os.23416.1.S1_at

Description gb:AK120768.1
DB_XREF= gi:37990391
TID=Os.23416.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23416 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007O22, full insert sequence.
FL= gb:AK120768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3927011/11Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os05g145801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39220Os.54781.1.S1_at10/117+23482115..23483650BES1/BZR1 homolog protein 1, putative, expressed
LOC_Os07g39230OsAffx.7916.1.S1_at8/117+23484464..23488788retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39240Os.49954.1.S1_at11/117+23489983..23493339expressed protein
LOC_Os07g39250OsAffx.16632.1.S1_at11/117+23495385..23498593expressed protein
LOC_Os07g39260OsAffx.16633.1.S1_at11/117+23501607..23502170expressed protein
LOC_Os07g39270Os.23416.2.S1_at11/117+23505158..23507599Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os07g39270Os.23416.1.S1_x_at11/117+23505158..23507599Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os07g39270Os.23416.1.S1_at11/117+23505158..23507599Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os07g39280Os.47410.1.S1_at11/117+23510217..23513938expressed protein
LOC_Os07g39290Os.54465.1.S1_at3/117+23520752..23523628RuvB-like 2, putative, expressed
LOC_Os07g39290Os.49478.1.S1_at1/117+23520752..23523628RuvB-like 2, putative, expressed
LOC_Os07g39300Os.8749.1.S1_at11/117+23525572..23533785expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008299biological_processisoprenoid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004311molecular_functionfarnesyltranstransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23416.1.S1_at--63--2531Chr07:23505955..23505979 (25 bp)
AACTTTGTAAGCTCATTAAGATTCA
LOC_Os07g39270
Os.23416.1.S1_at--30--7071Chr07:23505949..23505973 (25 bp)
GTAAGCTCATTAAGATTCAGATTTG
LOC_Os07g39270
Os.23416.1.S1_at--473--9171Chr07:23505798..23505822 (25 bp)
TGCCCTATACCCCAATTGCTTGATT
LOC_Os07g39270
Os.23416.1.S1_at--425--4311Chr07:23505795..23505819 (25 bp)
CCTATACCCCAATTGCTTGATTCTT
LOC_Os07g39270
Os.23416.1.S1_at--140--10191Chr07:23505793..23505817 (25 bp)
TATACCCCAATTGCTTGATTCTTGA
LOC_Os07g39270
Os.23416.1.S1_at--163--9971Chr07:23505791..23505815 (25 bp)
TACCCCAATTGCTTGATTCTTGACA
LOC_Os07g39270
Os.23416.1.S1_at--745--4213Chr07:23505789..23505813 (25 bp)
CCCCAATTGCTTGATTCTTGACAAT
LOC_Os07g39270
Os.23416.1.S1_at--315--4931Chr07:23505781..23505805 (25 bp)
GCTTGATTCTTGACAATTGAACACA
LOC_Os07g39270
Os.23416.1.S1_at--1093--6551Chr07:23505777..23505801 (25 bp)
GATTCTTGACAATTGAACACATCAT
LOC_Os07g39270
Os.23416.1.S1_at--246--5611Chr07:23505770..23505794 (25 bp)
GACAATTGAACACATCATATCATAA
LOC_Os07g39270
Os.23416.1.S1_at--871--8971Chr07:23505764..23505788 (25 bp)
TGAACACATCATATCATAAAGGAAG
LOC_Os07g39270
Target Sequence 
AACTTTGTAAGCTCATTAAGATTCAGATTTGAGGAATATCTGAATTATCTTGTGATACGTGCTAGTTGTAGTTTCTTATC
TTGAGAAGAATATCTGGTTGACAAATGTCAATTTCCTAGTTAGTCAGTCAAANCGGAATAANGAAAATCAGCCTCTCTGC
CCTATACCCCAATTGCTTGATTCTTGACAATTGAACACATCATATCATAAAGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis