Browse Element(s) Details


Os.8749.1.S1_at

Description gb:AK103439.1
DB_XREF= gi:32988648
TID=Os.8749.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8749 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033129C21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033129C21, full insert sequence.
FL= gb:AK103439.1 gb:AK061656.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3930011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39260OsAffx.16633.1.S1_at11/117+23501607..23502170expressed protein
LOC_Os07g39270Os.23416.2.S1_at11/117+23505158..23507599Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os07g39270Os.23416.1.S1_x_at11/117+23505158..23507599Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os07g39270Os.23416.1.S1_at11/117+23505158..23507599Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os07g39280Os.47410.1.S1_at11/117+23510217..23513938expressed protein
LOC_Os07g39290Os.54465.1.S1_at3/117+23520752..23523628RuvB-like 2, putative, expressed
LOC_Os07g39290Os.49478.1.S1_at1/117+23520752..23523628RuvB-like 2, putative, expressed
LOC_Os07g39300Os.8749.1.S1_at11/117+23525572..23533785expressed protein
LOC_Os07g39310OsAffx.5576.1.S1_at11/117+23539211..23541545Zinc finger, C2H2 type family protein, expressed
LOC_Os07g39320Os.6271.1.S1_at11/117+23557833..23559168Homeobox domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8749.1.S1_at--655--2091Chr07:23532482..23532506 (25 bp)
ACATGAACCGGTTGCGTCCACTAGG
LOC_Os07g39300
Os.8749.1.S1_at--1009--911Chr07:23532504..23532528 (25 bp)
AGGCTAGAGCGCATTCTCAGTGGCA
LOC_Os07g39300
Os.8749.1.S1_at--776--10871Chr07:23533363..23533387 (25 bp)
TTGGCCCAGATCGTTATGCACTTGA
LOC_Os07g39300
Os.8749.1.S1_at--1071--1011Chr07:23533417..23533441 (25 bp)
AGGTATACCGCACTTGCAGGTCTTA
LOC_Os07g39300
Os.8749.1.S1_at--559--7751Chr07:23533462..23533486 (25 bp)
GGTGTTTCACTGTAGCATCCATCCT
LOC_Os07g39300
Os.8749.1.S1_at--323--1931Chr07:23533595..23533619 (25 bp)
ACGGTATACCTATGATGCTGCCAGC
LOC_Os07g39300
Os.8749.1.S1_at--107--1971Chr07:23533639..23533663 (25 bp)
ACTGTATTTTATTCGTCTCGCACGG
LOC_Os07g39300
Os.8749.1.S1_at--846--4111Chr07:23533657..23533681 (25 bp)
CGCACGGTGTCGATCCTTATTTCAG
LOC_Os07g39300
Os.8749.1.S1_at--898--5251Chr07:23533711..23533735 (25 bp)
GAATCTGGTAGCTTTATCGCCTGAT
LOC_Os07g39300
Os.8749.1.S1_at--447--10151Chr07:23533725..23533749 (25 bp)
TATCGCCTGATGTGGATGTCACCAT
LOC_Os07g39300
Os.8749.1.S1_at--432--7111Chr07:23533742..23533766 (25 bp)
GTCACCATGGCTATTTCAGGATCTA
LOC_Os07g39300
Target Sequence 
ACATGAACCGGTTGCGTCCACTAGGCTAGAGCGCATTCTCAGTGGCATGCAGGACATCGAATACCTGAAGCTTTATTCGT
CAAGGTACGGCAGGGAGGAAGGTTTAGCTCTCCTTGAGAAGACAGGCGTNTATCTTGGCCCAGATCGTTATGCACTTGAC
CATGGACCAATTGATGTGATGCGTGGTGAGGTATACCGCACTTGCAGGTCTTAGGGCAGAGCTATCAACTTCTGGTGTTT
CACTGTAGCATCCATCCTGTTGTTGTACATATGATTTCTCATGTACTGGGAGTTGCTAGCAGCAAATACTTATCGTTGAA
CCCATCAAAGCTCCGTTTTCACGCTCACCTGTTAACACTCCATTCTACGGTATACCTATGATGCTGCCAGCGTGTGACTG
CAGCACACGAACTGTATTTTATTCGTCTCGCACGGTGTCGATCCTTATTTCAGAAGGGACATTATGGTGCCCTGTCCCTT
CAGAATCTGGTAGCTTTATCGCCTGATGTGGATGTCACCATGGCTATTTCAGGATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8749.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis