Browse Element(s) Details


OsAffx.5576.1.S1_at

Description tigr:9635.m03918
TID=OsAffx.5576.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to zinc finger protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3931011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39290Os.54465.1.S1_at3/117+23520752..23523628RuvB-like 2, putative, expressed
LOC_Os07g39290Os.49478.1.S1_at1/117+23520752..23523628RuvB-like 2, putative, expressed
LOC_Os07g39300Os.8749.1.S1_at11/117+23525572..23533785expressed protein
LOC_Os07g39310OsAffx.5576.1.S1_at11/117+23539211..23541545Zinc finger, C2H2 type family protein, expressed
LOC_Os07g39320Os.6271.1.S1_at11/117+23557833..23559168Homeobox domain containing protein, expressed
LOC_Os07g39330OsAffx.16635.1.S1_at10/117+23560477..23560780hypothetical protein
LOC_Os07g39340Os.43764.1.A1_at3/117+23564441..23566897hAT family dimerisation domain containing protein
LOC_Os07g39340OsAffx.24046.7.S1_x_at2/117+23564441..23566897hAT family dimerisation domain containing protein
LOC_Os07g39340OsAffx.24046.2.S1_x_at2/117+23564441..23566897hAT family dimerisation domain containing protein
LOC_Os07g39340OsAffx.24046.3.S1_x_at1/117+23564441..23566897hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5576.1.S1_at--633--4751Chr07:23540976..23541000 (25 bp)
GCTGAGGTTGGTGCTTCGCAATCAA
LOC_Os07g39310
OsAffx.5576.1.S1_at--683--10271Chr07:23541008..23541032 (25 bp)
TTTCCTGAAGGAGTTTGGGCTCGCC
LOC_Os07g39310
OsAffx.5576.1.S1_at--786--7651Chr07:23541072..23541096 (25 bp)
GGGAGGTTCACTACTGGTAACACAC
LOC_Os07g39310
OsAffx.5576.1.S1_at--706--3751Chr07:23541136..23541160 (25 bp)
CTCATCCGCCTCAAGGAAGGTTCAT
LOC_Os07g39310
OsAffx.5576.1.S1_at--139--2911Chr07:23541152..23541176 (25 bp)
AAGGTTCATGGATAACGTCCCACAG
LOC_Os07g39310
OsAffx.5576.1.S1_at--986--5571Chr07:23541261..23541285 (25 bp)
GAAATGGAGCCTGGGCCGATGCTAC
LOC_Os07g39310
OsAffx.5576.1.S1_at--239--10851Chr07:23541301..23541325 (25 bp)
TTGGTCTCACCTATGACACTGGGAA
LOC_Os07g39310
OsAffx.5576.1.S1_at--1021--8211Chr07:23541322..23541346 (25 bp)
GGAATTCAGGGTTGCCGGACTTGAT
LOC_Os07g39310
OsAffx.5576.1.S1_at--133--711Chr07:23541345..23541369 (25 bp)
ATGATGGGACCATCGGCACTGTACG
LOC_Os07g39310
OsAffx.5576.1.S1_at--1118--9451Chr07:23541386..23541410 (25 bp)
TCTGGACTTCCTTGGGCTTGGCATT
LOC_Os07g39310
OsAffx.5576.1.S1_at--746--2291Chr07:23541437..23541461 (25 bp)
AAATGGTGGCCTCCCGGCATTGATG
LOC_Os07g39310
Target Sequence 
GCTGAGGTTGGTGCTTCGCAATCAAGCTCATCTTTCCTGAAGGAGTTTGGGCTCGCCGCCTCCACCTCATCGTCTCCCCC
ATCCAAGCTATCCCAAGGGAGGTTCACTACTGGTAACACACCAACAACATCTCATCCACATCCACATCCACATCCGCATC
CTCATCCGCCTCAAGGAAGGTTCATGGATAACGTCCCACAGCCGCCACCGCCAGCCAAGCTGCCACATCGAATGTTCACC
GATAACAGTGTACAACAGTGGCACCATAGGAGCAACCAGCAAATGGAAATGGAGCCTGGGCCGATGCTACCTGGCGGTCT
TGGCCTTGGTCTCACCTATGACACTGGGAATTCAGGGTTGCCGGACTTGATGATGGGACCATCGGCACTGTACGGTCCCA
AGCCTGCCACTCTGGACTTCCTTGGGCTTGGCATTGGAGGGACCATGGGTGGCTCCACTGCAAATGGTGGCCTCCCGGCA
TTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis