Browse Element(s) Details


OsAffx.16635.1.S1_at

Description tigr:9635.m03921
TID=OsAffx.16635.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3933010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39310OsAffx.5576.1.S1_at11/117+23539211..23541545Zinc finger, C2H2 type family protein, expressed
LOC_Os07g39320Os.6271.1.S1_at11/117+23557833..23559168Homeobox domain containing protein, expressed
LOC_Os07g39330OsAffx.16635.1.S1_at10/117+23560477..23560780hypothetical protein
LOC_Os07g39340Os.43764.1.A1_at3/117+23564441..23566897hAT family dimerisation domain containing protein
LOC_Os07g39340OsAffx.24046.7.S1_x_at2/117+23564441..23566897hAT family dimerisation domain containing protein
LOC_Os07g39340OsAffx.24046.2.S1_x_at2/117+23564441..23566897hAT family dimerisation domain containing protein
LOC_Os07g39340OsAffx.24046.3.S1_x_at1/117+23564441..23566897hAT family dimerisation domain containing protein
LOC_Os07g39350Os.6931.1.S1_at11/117+23580371..23582854Sugar transporter family protein, expressed
LOC_Os07g39360Os.49972.1.S1_at11/117+23583007..23584768sorbitol transporter, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16635.1.S1_at--1123--7471Chr07:23560507..23560531 (25 bp)
GTGTGGGATCATGACTTGGATGTAT
LOC_Os07g39330
OsAffx.16635.1.S1_at--403--8951Chr07:23560518..23560542 (25 bp)
TGACTTGGATGTATGTCGACAGCAA
LOC_Os07g39330
OsAffx.16635.1.S1_at--992--8691Chr07:23560531..23560555 (25 bp)
TGTCGACAGCAAGAGAAGGTGGCAA
LOC_Os07g39330
OsAffx.16635.1.S1_at--99--8591Chr07:23560563..23560587 (25 bp)
TGGTTATCGATTTTGTCACCCGATA
LOC_Os07g39330
OsAffx.16635.1.S1_at--166--171Chr07:23560572..23560596 (25 bp)
ATTTTGTCACCCGATAGCCATATCC
LOC_Os07g39330
OsAffx.16635.1.S1_at--1050--291Chr07:23560585..23560609 (25 bp)
ATAGCCATATCCGTCTCAAGTGTGA
LOC_Os07g39330
OsAffx.16635.1.S1_at--1055--251Chr07:23560591..23560615 (25 bp)
ATATCCGTCTCAAGTGTGAGTGTGA
LOC_Os07g39330
OsAffx.16635.1.S1_at--283--7471Chr07:23560604..23560628 (25 bp)
GTGTGAGTGTGAGTGGTCCAAATAA
LOC_Os07g39330
OsAffx.16635.1.S1_at--570--7771Chr07:23560618..23560642 (25 bp)
GGTCCAAATAAGTCCGGCACTCTAG
LOC_Os07g39330
OsAffx.16635.1.S1_at--130--8251NONE
GGCACTCTAGACTCCGAAGCTGCTA
NONE
OsAffx.16635.1.S1_at--179--5411Chr07:23560648..23560748 (25 bp)
GAAGCTGCTACCAAGTCCAGCATAA
LOC_Os07g39330
Target Sequence 
GTGTGGGATCATGACTTGGATGTATGTCGACAGCAAGAGAAGGTGGCAAGGGAAGATGGTTATCGATTTTGTCACCCGAT
AGCCATATCCGTCTCAAGTGTGAGTGTGAGTGGTCCAAATAAGTCCGGCACTCTAGACTCCGAAGCTGCTACCAAGTCCA
GCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16635.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis