Browse Element(s) Details


Os.49972.1.S1_at

Description gb:AK119464.1
DB_XREF= gi:37989087
TID=Os.49972.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49972 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-133-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-133-F04, full insert sequence.
FL= gb:AK119464.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3936011/11sorbitol transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39320Os.6271.1.S1_at11/117+23557833..23559168Homeobox domain containing protein, expressed
LOC_Os07g39330OsAffx.16635.1.S1_at10/117+23560477..23560780hypothetical protein
LOC_Os07g39340Os.43764.1.A1_at3/117+23564441..23566897hAT family dimerisation domain containing protein
LOC_Os07g39340OsAffx.24046.7.S1_x_at2/117+23564441..23566897hAT family dimerisation domain containing protein
LOC_Os07g39340OsAffx.24046.2.S1_x_at2/117+23564441..23566897hAT family dimerisation domain containing protein
LOC_Os07g39340OsAffx.24046.3.S1_x_at1/117+23564441..23566897hAT family dimerisation domain containing protein
LOC_Os07g39350Os.6931.1.S1_at11/117+23580371..23582854Sugar transporter family protein, expressed
LOC_Os07g39360Os.49972.1.S1_at11/117+23583007..23584768sorbitol transporter, putative, expressed
LOC_Os07g39370OsAffx.28820.1.S1_at11/117+23587214..23588187hypothetical protein
LOC_Os07g39380NANA7+23588762..23593114retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39390Os.6256.3.S1_at11/117+23594593..23596586expressed protein
LOC_Os07g39390Os.6256.3.S1_x_at11/117+23594593..23596586expressed protein
LOC_Os07g39400Os.46375.1.S1_at10/117+23596945..23602672Ribosome associated membrane protein RAMP4 containing protein, expressed
LOC_Os07g39410OsAffx.26175.1.S1_at1/117+23604247..23607276retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0005354molecular_functiongalactose transporter activity
GO:0005355molecular_functionglucose transporter activity
GO:0005365molecular_functionmyo-inositol transporter activity
GO:0005403molecular_functionhydrogen:sugar symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
GO:0015148molecular_functionD-xylose transporter activity
GO:0015168molecular_functionglycerol transporter activity
GO:0015575molecular_functionmannitol transporter activity
GO:0015591molecular_functionD-ribose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49972.1.S1_at--579--9411Chr07:23583410..23583434 (25 bp)
TCGGGCCCATGTCCGGCGTGTACAC
LOC_Os07g39360
Os.49972.1.S1_at--819--771Chr07:23583402..23583426 (25 bp)
ATGTCCGGCGTGTACACCTCGGAGA
LOC_Os07g39360
Os.49972.1.S1_at--581--9411Chr07:23583234..23583258 (25 bp)
TCGTCGCTCGCGTGGGTGTTCTTCT
LOC_Os07g39360
Os.49972.1.S1_at--734--7491Chr07:23583223..23583247 (25 bp)
GTGGGTGTTCTTCTTCACTCGCCTC
LOC_Os07g39360
Os.49972.1.S1_at--883--8431Chr07:23583139..23583163 (25 bp)
GGCCATGGAAGCAGAGGACTCCGCC
LOC_Os07g39360
Os.49972.1.S1_at--110--8131Chr07:23583124..23583148 (25 bp)
GGACTCCGCCGCGTACAGGGAAAGA
LOC_Os07g39360
Os.49972.1.S1_at--444--4211Chr07:23583119..23583143 (25 bp)
CCGCCGCGTACAGGGAAAGACTCTT
LOC_Os07g39360
Os.49972.1.S1_at--149--7631Chr07:23583107..23583131 (25 bp)
GGGAAAGACTCTTGGCAACTTCTCC
LOC_Os07g39360
Os.49972.1.S1_at--866--8231Chr07:23583094..23583118 (25 bp)
GGCAACTTCTCCATGAAACAAAAAT
LOC_Os07g39360
Os.49972.1.S1_at--26--411Chr07:23583048..23583072 (25 bp)
ATCAGTATTTATCATTGTGCATTCT
LOC_Os07g39360
Os.49972.1.S1_at--516--7331Chr07:23583032..23583056 (25 bp)
GTGCATTCTTGTTAACTTCTTCATG
LOC_Os07g39360
Target Sequence 
TCGGGCCCATGTCCGGCGTGTACACCTCGGAGATCTTCCCGCTGCGGGCGCGCGCGCTGGGCTTCGCGGTCGCCGTGGCG
TGCAACCGCGTCACCAGCGGCGTCATCTCCATGACCTTCCTGTCGCTCTCCAGCGCCATCACCATCGGCGGCAGCTTCTT
CCTCTACGCCGCCATCTCGTCGCTCGCGTGGGTGTTCTTCTTCACTCGCCTCCCGGAGACGCGCGGCCAGACGCTGGAGG
AGATCGGCAAGGTGTTCGGCATGGACGACACGGCCATGGAAGCAGAGGACTCCGCCGCGTACAGGGAAAGACTCTTGGCA
ACTTCTCCATGAAACAAAAATTCAAAGCTGGAATTATCAATTATCAGTATTTATCATTGTGCATTCTTGTTAACTTCTTC
ATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49972.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis