Browse Element(s) Details


OsAffx.28820.1.S1_at

Description tigr:9635.m03925
TID=OsAffx.28820.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3937011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39340Os.43764.1.A1_at3/117+23564441..23566897hAT family dimerisation domain containing protein
LOC_Os07g39340OsAffx.24046.7.S1_x_at2/117+23564441..23566897hAT family dimerisation domain containing protein
LOC_Os07g39340OsAffx.24046.2.S1_x_at2/117+23564441..23566897hAT family dimerisation domain containing protein
LOC_Os07g39340OsAffx.24046.3.S1_x_at1/117+23564441..23566897hAT family dimerisation domain containing protein
LOC_Os07g39350Os.6931.1.S1_at11/117+23580371..23582854Sugar transporter family protein, expressed
LOC_Os07g39360Os.49972.1.S1_at11/117+23583007..23584768sorbitol transporter, putative, expressed
LOC_Os07g39370OsAffx.28820.1.S1_at11/117+23587214..23588187hypothetical protein
LOC_Os07g39380NANA7+23588762..23593114retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39390Os.6256.3.S1_at11/117+23594593..23596586expressed protein
LOC_Os07g39390Os.6256.3.S1_x_at11/117+23594593..23596586expressed protein
LOC_Os07g39400Os.46375.1.S1_at10/117+23596945..23602672Ribosome associated membrane protein RAMP4 containing protein, expressed
LOC_Os07g39410OsAffx.26175.1.S1_at1/117+23604247..23607276retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g39420NANA7+23611029..23611592retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28820.1.S1_at--869--7371Chr07:23587323..23587347 (25 bp)
GTGATCGGTCGCTTCCCGATTCAGA
LOC_Os07g39370
OsAffx.28820.1.S1_at--194--7231Chr07:23587330..23587351 (22 bp)
GTCGCTTCCCGATTCAGAGTGGAGA
LOC_Os07g39370
OsAffx.28820.1.S1_at--936--4231Chr07:23587338..23587457 (25 bp)
CCGATTCAGAGTGGAGAGACTGGTC
LOC_Os07g39370
OsAffx.28820.1.S1_at--1080--1951Chr07:23587451..23587475 (25 bp)
ACTGGTCGAGCATTGGGAATGGCCC
LOC_Os07g39370
OsAffx.28820.1.S1_at--429--5771Chr07:23587510..23587705 (25 bp)
GACGATGTCGCGGACTACGCGGACC
LOC_Os07g39370
OsAffx.28820.1.S1_at--599--8511Chr07:23587847..23587871 (25 bp)
TGGACCCGACCAGCCTAATGATTTC
LOC_Os07g39370
OsAffx.28820.1.S1_at--289--4091Chr07:23587934..23587958 (25 bp)
CGACGGTGGTGGTCTACTTCGAGAA
LOC_Os07g39370
OsAffx.28820.1.S1_at--55--3731Chr07:23587947..23587971 (25 bp)
CTACTTCGAGAACGCACGTAAGCTC
LOC_Os07g39370
OsAffx.28820.1.S1_at--502--5971Chr07:23587954..23587978 (25 bp)
GAGAACGCACGTAAGCTCGCCGCCG
LOC_Os07g39370
OsAffx.28820.1.S1_at--625--8491Chr07:23587999..23588023 (25 bp)
TGGACGGTGGTCGAACCCGACGCCA
LOC_Os07g39370
OsAffx.28820.1.S1_at--536--1051Chr07:23588099..23588123 (25 bp)
AGGTGAGGACGACAGACCACCGGCT
LOC_Os07g39370
Target Sequence 
GTGATCGGTCGCTTCCCGATTCAGAGTGGAGAGACTGGTCGAGCATTGGGAATGGCCCGGCGTGGCTGATCTCCGAGCGC
GTGCTCGCCGGCGACGATGTCGCGGACTACGCGGACCTCCCGGAGCTCCGGGGCCACCGCGTGTTCGGGCCCACCGCGGA
GGGCCTCCTCGTCCTGCTCGACGAGGCCACCTTCGCCGTCCGCCTGCTGAACCCACTCACCCGGCAGCTCACCGACCTCC
CGCCGGCGACCACGGTTCTGGACCCGACCAGCCTAATGATTTCCCCCGTACACTACCTCCTCCACGTTCTCACGGTGCAC
GGCGCCGGCCTCGCCGACGGCTCCGCGACGGTGGTGGTCTACTTCGAGAACGCACGTAAGCTCGCCGCCGCCAAGCCCGG
CGACGAGCGGTGGACGGTGGTCGAACCCGACGCCAGCTTCGCCTCCGTCTCGTCGTTCGCGGGCCGCTTCTACTGCGCCA
CCCGCCACGCCATCCGCCCGGTGATCGTGGAGGTGAGGACGACAGACCACCGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis