Browse Element(s) Details


OsAffx.26175.1.S1_at

Description tigr:9632.m02534
TID=OsAffx.26175.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2694011/11hypothetical protein
LOC_Os07g394101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26910Os.37724.1.S1_at11/114+15728220..15731517Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g26910Os.25795.1.S1_s_at11/114+15728220..15731517Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g26920OsAffx.26173.1.S1_s_at11/114+15736995..15740760IN2-2 protein, putative, expressed
LOC_Os04g26920Os.11837.1.S1_at11/114+15736995..15740760IN2-2 protein, putative, expressed
LOC_Os04g26920OsAffx.26173.1.S1_at10/114+15736995..15740760IN2-2 protein, putative, expressed
LOC_Os04g26930NANA4+15745470..15746091hypothetical protein
LOC_Os04g26940OsAffx.26175.1.S1_at11/114+15749555..15750487hypothetical protein
LOC_Os04g26950OsAffx.13988.1.S1_at10/114+15751389..15753300hypothetical protein
LOC_Os04g26960OsAffx.26176.1.S1_at10/114+15756041..15760995Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g26970Os.57108.1.S1_at2/114+15761943..15762713retrotransposon protein, putative, unclassified
LOC_Os04g26970OsAffx.20369.1.S1_at2/114+15761943..15762713retrotransposon protein, putative, unclassified
LOC_Os04g26980OsAffx.13989.1.S1_at11/114+15766318..15770313Terpene synthase family, metal binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26175.1.S1_at--793--6031Chr04:15750427..15750451 (25 bp)
GAGATCACAATTCGCAATCTCCCGC
LOC_Os04g26940
OsAffx.26175.1.S1_at--1078--3051Chr04:15750412..15750436 (25 bp)
AATCTCCCGCGCCTAGTCGAGATCG
LOC_Os04g26940
OsAffx.26175.1.S1_at--238--7632Chr12:12170998..12171419 (25 bp)
GGGACACAATCATTGTTCGAGAAGC
NONE
OsAffx.26175.1.S1_at--185--5971Chr04:15750369..15750393 (25 bp)
GAGAAGCCGGGCTCCTAAACCAAGC
LOC_Os04g26940
OsAffx.26175.1.S1_at--226--10311Chr04:15750319..15750343 (25 bp)
TTTCTTCATCAGATATACCTCCCCT
LOC_Os04g26940
OsAffx.26175.1.S1_at--788--9931Chr04:15750295..15750319 (25 bp)
TACGACGTCATAACCATGGGCCGCC
LOC_Os04g26940
OsAffx.26175.1.S1_at--983--3631Chr04:15750197..15750295 (25 bp)
CTTCCGTCCCAGGAGGCAGATGATG
LOC_Os04g26940
OsAffx.26175.1.S1_at--529--9711Chr04:15749674..15749698 (25 bp)
TCAACCAAAAGAGACGCACCAGAGT
LOC_Os04g26940
OsAffx.26175.1.S1_at--633--5131Chr04:15749631..15749655 (25 bp)
GCAAAAGTGGGAAGCGCAAACTCTC
LOC_Os04g26940
OsAffx.26175.1.S1_at--636--5132Chr07:23605771..23606273 (25 bp)
GCAAACTCTCGGGAGAGGTCCTCGC
LOC_Os07g39410
OsAffx.26175.1.S1_at--24--1032Chr06:120532..120553 (22 bp)
AGGTCCTCGCTGCTGAGCAAACGGA
NONE
Target Sequence 
GAGATCACAATTCGCAATCTCCCGCGCCTAGTCGAGATCGGGGACACAATCATTGTTCGAGAAGCCGGGCTCCTAAACCA
AGCGACCCCTCATCCTCGTCTTCGTCATTTTCTTCATCAGATATACCTCCCCTACGACGTCATAACCATGGGCCGCCTTC
CGTCCCAGGAGGCAGATGATGCTTTAAGAGAAAAGGAGGGAAAGAGCAAGGTGGGTGAGGAGAAGAAGTCAACCAAAAGA
GACGCACCAGAGTCGAGCAAAAAGAGAAGTCGCAAAAGTGGGAAGCGCAAACTCTCGGGAGAGGTCCTCGCTGCTGAGCA
AACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis