Browse Element(s) Details


OsAffx.26173.1.S1_s_at

Description tigr:9632.m02532
TID=OsAffx.26173.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, aldoketo reductase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2692011/11IN2-2 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26880NANA4+15709146..15716294transposon protein, putative, Mutator sub-class
LOC_Os04g26890OsAffx.26173.2.S1_at11/114+15717258..15718025IN2-2 protein, putative, expressed
LOC_Os04g26900OsAffx.3912.1.S1_at11/114+15719920..15724161hypothetical protein
LOC_Os04g26910Os.37724.1.S1_at11/114+15728220..15731517Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g26910Os.25795.1.S1_s_at11/114+15728220..15731517Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g26920OsAffx.26173.1.S1_s_at11/114+15736995..15740760IN2-2 protein, putative, expressed
LOC_Os04g26920Os.11837.1.S1_at11/114+15736995..15740760IN2-2 protein, putative, expressed
LOC_Os04g26920OsAffx.26173.1.S1_at10/114+15736995..15740760IN2-2 protein, putative, expressed
LOC_Os04g26930NANA4+15745470..15746091hypothetical protein
LOC_Os04g26940OsAffx.26175.1.S1_at11/114+15749555..15750487hypothetical protein
LOC_Os04g26950OsAffx.13988.1.S1_at10/114+15751389..15753300hypothetical protein
LOC_Os04g26960OsAffx.26176.1.S1_at10/114+15756041..15760995Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g26970Os.57108.1.S1_at2/114+15761943..15762713retrotransposon protein, putative, unclassified
LOC_Os04g26970OsAffx.20369.1.S1_at2/114+15761943..15762713retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0003700molecular_functiontranscription factor activity
GO:0004033molecular_functionaldo-keto reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26173.1.S1_s_at--1138--1251Chr04:15740143..15740167 (25 bp)
AGATTTCAACCAGCGAATCTCGAGA
LOC_Os04g26920
OsAffx.26173.1.S1_s_at--628--1711Chr04:15740151..15740175 (25 bp)
ACCAGCGAATCTCGAGAAGAATGCT
LOC_Os04g26920
OsAffx.26173.1.S1_s_at--381--2992Chr07:27136313..27136442 (25 bp)
AATGTAGCAGCTCTATCTGTGAAGC
NONE
OsAffx.26173.1.S1_s_at--495--8971Chr04:15740358..15740382 (25 bp)
TGAACTTGAGTCCTATGCCAGCACA
LOC_Os04g26920
OsAffx.26173.1.S1_s_at--856--8891Chr04:15740364..15740388 (25 bp)
TGAGTCCTATGCCAGCACAGATGTT
LOC_Os04g26920
OsAffx.26173.1.S1_s_at--379--591Chr04:15740372..15740396 (25 bp)
ATGCCAGCACAGATGTTGTTCAAGG
LOC_Os04g26920
OsAffx.26173.1.S1_s_at--457--3431Chr04:15740381..15740405 (25 bp)
CAGATGTTGTTCAAGGTGACCGCTA
LOC_Os04g26920
OsAffx.26173.1.S1_s_at--510--8791Chr04:15740388..15740412 (25 bp)
TGTTCAAGGTGACCGCTATGCTCAG
LOC_Os04g26920
OsAffx.26173.1.S1_s_at--935--2891Chr04:15740393..15740417 (25 bp)
AAGGTGACCGCTATGCTCAGACGGC
LOC_Os04g26920
OsAffx.26173.1.S1_s_at--411--4871Chr04:15740402..15740426 (25 bp)
GCTATGCTCAGACGGCCGGCACTTG
LOC_Os04g26920
OsAffx.26173.1.S1_s_at--618--9391Chr04:15740409..15740433 (25 bp)
TCAGACGGCCGGCACTTGGAAGGAT
LOC_Os04g26920
Target Sequence 
AGATTTCAACCAGCGAATCTCGAGAAGAATGCTGAAATATTTGAGCGTGTTAACGCAATGGCAGCCAGAAAAGGATGCAC
ACCGTCACAACTCGCATTGGCCTGGGTCCATCATCAGGGAAGCGACGTATGCCCCATACCTGGGACAACAAAAATCGAGA
ATTTCAATCAAAATGTAGCAGCTCTATCTGTGAAGCTCACCCCTGGGGAAATGACTGAACTTGAGTCCTATGCCAGCACA
GATGTTGTTCAAGGTGACCGCTATGCTCAGACGGCCGGCACTTGGAAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26173.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis