Browse Element(s) Details


OsAffx.3912.1.S1_at

Description tigr:9632.m02530
TID=OsAffx.3912.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=similar to auxin-induced protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2690011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26870Os.11469.1.S1_at11/114+15701417..15706514Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g26880NANA4+15709146..15716294transposon protein, putative, Mutator sub-class
LOC_Os04g26890OsAffx.26173.2.S1_at11/114+15717258..15718025IN2-2 protein, putative, expressed
LOC_Os04g26900OsAffx.3912.1.S1_at11/114+15719920..15724161hypothetical protein
LOC_Os04g26910Os.37724.1.S1_at11/114+15728220..15731517Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g26910Os.25795.1.S1_s_at11/114+15728220..15731517Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g26920OsAffx.26173.1.S1_s_at11/114+15736995..15740760IN2-2 protein, putative, expressed
LOC_Os04g26920Os.11837.1.S1_at11/114+15736995..15740760IN2-2 protein, putative, expressed
LOC_Os04g26920OsAffx.26173.1.S1_at10/114+15736995..15740760IN2-2 protein, putative, expressed
LOC_Os04g26930NANA4+15745470..15746091hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0003700molecular_functiontranscription factor activity
GO:0004033molecular_functionaldo-keto reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3912.1.S1_at--906--3311Chr04:15722804..15722828 (25 bp)
CACATGTGGTCACTGGTACCTGTAA
LOC_Os04g26900
OsAffx.3912.1.S1_at--420--10011Chr04:15722844..15722868 (25 bp)
TAGCACCCACCCGTGAAAATCAAGT
LOC_Os04g26900
OsAffx.3912.1.S1_at--373--10131Chr04:15722897..15722921 (25 bp)
TATGACTTCCTTAAGCGGTCTCCTA
LOC_Os04g26900
OsAffx.3912.1.S1_at--359--2251Chr04:15723823..15723846 (24 bp)
AAATCTGCCTAGATTCCAACCAGAA
LOC_Os04g26900
OsAffx.3912.1.S1_at--245--3231Chr04:15723864..15723888 (25 bp)
CAAGATATTCGATCGCGTCAATGCG
LOC_Os04g26900
OsAffx.3912.1.S1_at--518--1231Chr04:15723920..15723944 (25 bp)
AGTTCGCACTGGCTTGGATTCACCA
LOC_Os04g26900
OsAffx.3912.1.S1_at--607--11Chr04:15723967..15723991 (25 bp)
ATACCCGGTACCACGAAGATCGAGA
LOC_Os04g26900
OsAffx.3912.1.S1_at--643--4271Chr04:15724020..15724044 (25 bp)
CCTGGAGCTCACTCGGGACGAAATG
LOC_Os04g26900
OsAffx.3912.1.S1_at--54--2291Chr04:15724040..15724064 (25 bp)
AAATGGCTGAGCTCGAATCCTACGC
LOC_Os04g26900
OsAffx.3912.1.S1_at--728--771Chr04:15724076..15724100 (25 bp)
ATGTGCACGGTGACTGGTACGCTCA
LOC_Os04g26900
OsAffx.3912.1.S1_at--741--5711Chr04:15724087..15724111 (25 bp)
GACTGGTACGCTCAGATGGCCAACA
LOC_Os04g26900
Target Sequence 
CACATGTGGTCACTGGTACCTGTAAAAATCAAGTGGCTGCTAGCACCCACCCGTGAAAATCAAGTGGCTGGCCGTGAAAA
TAGAAATGATCTTTATGACTTCCTTAAGCGGTCTCCTATAGGGATGGAAACAAATCTGCCTAGATTCCAACCAGAAAACC
TTGAGAAGAATGCCAAGATATTCGATCGCGTCAATGCGATGGCGATGAGGAAAGGATGCACGGCTGCGCAGTTCGCACTG
GCTTGGATTCACCACAAGGGGGACGATGTTTGCCCCATACCCGGTACCACGAAGATCGAGAATTTCGACCAGAATGTTGG
GGCTCTGTCCCTGGAGCTCACTCGGGACGAAATGGCTGAGCTCGAATCCTACGCTGCTGCTGCTGATGTGCACGGTGACT
GGTACGCTCAGATGGCCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3912.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis