Browse Element(s) Details


Os.11837.1.S1_at

Description gb:AK105093.1
DB_XREF= gi:32990302
TID=Os.11837.1
CNT=25
FEA=FLmRNA
TIER=FL+Stack
STK=17
UG=Os.11837 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-A01, full insert sequence.
FL= gb:AK105093.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2692011/11IN2-2 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26880NANA4+15709146..15716294transposon protein, putative, Mutator sub-class
LOC_Os04g26890OsAffx.26173.2.S1_at11/114+15717258..15718025IN2-2 protein, putative, expressed
LOC_Os04g26900OsAffx.3912.1.S1_at11/114+15719920..15724161hypothetical protein
LOC_Os04g26910Os.37724.1.S1_at11/114+15728220..15731517Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g26910Os.25795.1.S1_s_at11/114+15728220..15731517Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g26920OsAffx.26173.1.S1_s_at11/114+15736995..15740760IN2-2 protein, putative, expressed
LOC_Os04g26920Os.11837.1.S1_at11/114+15736995..15740760IN2-2 protein, putative, expressed
LOC_Os04g26920OsAffx.26173.1.S1_at10/114+15736995..15740760IN2-2 protein, putative, expressed
LOC_Os04g26930NANA4+15745470..15746091hypothetical protein
LOC_Os04g26940OsAffx.26175.1.S1_at11/114+15749555..15750487hypothetical protein
LOC_Os04g26950OsAffx.13988.1.S1_at10/114+15751389..15753300hypothetical protein
LOC_Os04g26960OsAffx.26176.1.S1_at10/114+15756041..15760995Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g26970Os.57108.1.S1_at2/114+15761943..15762713retrotransposon protein, putative, unclassified
LOC_Os04g26970OsAffx.20369.1.S1_at2/114+15761943..15762713retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0003700molecular_functiontranscription factor activity
GO:0004033molecular_functionaldo-keto reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11837.1.S1_at--315--6051Chr04:15740467..15740491 (25 bp)
GAGTAAACGTTTTCATATGTTCAAA
LOC_Os04g26920
Os.11837.1.S1_at--76--551Chr04:15740498..15740522 (25 bp)
ATCCCGGTTCAAATTTAGCTCAAAT
LOC_Os04g26920
Os.11837.1.S1_at--20--2311Chr04:15740519..15740543 (25 bp)
AAATGGCAGAGCACACACCAGATTT
LOC_Os04g26920
Os.11837.1.S1_at--479--5951Chr04:15740527..15740551 (25 bp)
GAGCACACACCAGATTTTGTATAAG
LOC_Os04g26920
Os.11837.1.S1_at--139--2871Chr04:15740549..15740573 (25 bp)
AAGTGTTCATTGTATCAGACGCGTT
LOC_Os04g26920
Os.11837.1.S1_at--342--3611Chr04:15740556..15740580 (25 bp)
CATTGTATCAGACGCGTTGCTCGCT
LOC_Os04g26920
Os.11837.1.S1_at--876--6671Chr04:15740571..15740595 (25 bp)
GTTGCTCGCTCTTGTTAAACCATCG
LOC_Os04g26920
Os.11837.1.S1_at--454--2371Chr04:15740587..15740611 (25 bp)
AAACCATCGCTTATGCTTGTTTGTG
LOC_Os04g26920
Os.11837.1.S1_at--626--4931Chr04:15740601..15740625 (25 bp)
GCTTGTTTGTGTCTAAAACCTAGCT
LOC_Os04g26920
Os.11837.1.S1_at--1042--1091Chr04:15740639..15740663 (25 bp)
AGTGTGGTTTTATTAGTTTGTGCGC
LOC_Os04g26920
Os.11837.1.S1_at--231--6871Chr04:15740654..15740678 (25 bp)
GTTTGTGCGCAGTACGTGTGCGAAT
LOC_Os04g26920
Target Sequence 
GAGTAAACGTTTTCATATGTTCAAATACAAAATCCCGGTTCAAATTTAGCTCAAATGGCAGAGCACACACCAGATTTTGT
ATAAGTGTTCATTGTATCAGACGCGTTGCTCGCTCTTGTTAAACCATCGCTTATGCTTGTTTGTGTCTAAAACCTAGCTA
GTGGTGTTGTAAAGTGTGGTTTTATTAGTTTGTGCGCAGTACGTGTGCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11837.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis