Browse Element(s) Details


OsAffx.26176.1.S1_at

Description tigr:9632.m02536
TID=OsAffx.26176.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Terpene synthase family, metal binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2696010/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26910Os.37724.1.S1_at11/114+15728220..15731517Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g26910Os.25795.1.S1_s_at11/114+15728220..15731517Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g26920OsAffx.26173.1.S1_s_at11/114+15736995..15740760IN2-2 protein, putative, expressed
LOC_Os04g26920Os.11837.1.S1_at11/114+15736995..15740760IN2-2 protein, putative, expressed
LOC_Os04g26920OsAffx.26173.1.S1_at10/114+15736995..15740760IN2-2 protein, putative, expressed
LOC_Os04g26930NANA4+15745470..15746091hypothetical protein
LOC_Os04g26940OsAffx.26175.1.S1_at11/114+15749555..15750487hypothetical protein
LOC_Os04g26950OsAffx.13988.1.S1_at10/114+15751389..15753300hypothetical protein
LOC_Os04g26960OsAffx.26176.1.S1_at10/114+15756041..15760995Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g26970Os.57108.1.S1_at2/114+15761943..15762713retrotransposon protein, putative, unclassified
LOC_Os04g26970OsAffx.20369.1.S1_at2/114+15761943..15762713retrotransposon protein, putative, unclassified
LOC_Os04g26980OsAffx.13989.1.S1_at11/114+15766318..15770313Terpene synthase family, metal binding domain containing protein
LOC_Os04g26994NANA4+15781431..15781735hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26176.1.S1_at--717--1331Chr04:15757767..15757791 (25 bp)
AGAGGTACCTTGCTGCTTTCTCCAA
LOC_Os04g26960
OsAffx.26176.1.S1_at--252--2671Chr04:15759730..15759754 (25 bp)
AAGCCGAGCTTCAACGATCAGGTGG
LOC_Os04g26960
OsAffx.26176.1.S1_at--383--391Chr04:15759746..15759770 (25 bp)
ATCAGGTGGCTCTGGGAACCGCAAC
LOC_Os04g26960
OsAffx.26176.1.S1_at--1061--3231Chr04:15759835..15759859 (25 bp)
CAAGCATTCCAGTGGGCTGTTACTA
LOC_Os04g26960
OsAffx.26176.1.S1_at--26--5811Chr04:15759865..15759889 (25 bp)
GACGCCATCATCTCCTGTGGAAAAA
LOC_Os04g26960
OsAffx.26176.1.S1_at--925--191NONE
ATTTCTGGATTCAAGCTTGGGTCGC
NONE
OsAffx.26176.1.S1_at--514--8491Chr04:15760724..15760748 (25 bp)
TGGCATGCGCAGTCGAGGCCTACAT
LOC_Os04g26960
OsAffx.26176.1.S1_at--102--10571Chr04:15760853..15760877 (25 bp)
TTCTTCCTGTGGTGCAGCGTATGAT
LOC_Os04g26960
OsAffx.26176.1.S1_at--62--8651Chr04:15760889..15760913 (25 bp)
TGGGCATCCAGTTGTTCTACGGCAA
LOC_Os04g26960
OsAffx.26176.1.S1_at--412--9931Chr04:15760906..15760930 (25 bp)
TACGGCAACGACTGTGATGCTTTCA
LOC_Os04g26960
OsAffx.26176.1.S1_at--922--6331Chr04:15760921..15760945 (25 bp)
GATGCTTTCACGTTCGGCAAACAGC
LOC_Os04g26960
Target Sequence 
AGAGGTACCTTGCTGCTTTCTCCAAGGCAGAGTTCCAAAAGCTGACCAGTAATTACCTGGAAGCAGCGGAATGGTACCAC
CGGAATCACAAGCCGAGCTTCAACGATCAGGTGGCTCTGGGAACCGCAACCACAGGCACAAGATCGCTTGCTGCCGGCCT
AATGCTTGGCATGGGTGATGCTGCAACAACAAAACAAGCATTCCAGTGGGCTGTTACTAGCACTGACGCCATCATCTCCT
GTGGAAAAATTGGGCGTTTAATGAATGACATTTCTGGATTCAAGCTTGGGTCGCAGAACAAAGCTGACATGGCATGCGCA
GTCGAGGCCTACATCGAGGAGCACAAGGTCACAGCCGACGTCGCCATCGCCAGGATAAACGAGGTGTTGGAGGACGAATG
GAAAACAACCAACCAGGCTCGCGTCGACCACCGGGCTGTTCTTCCTGTGGTGCAGCGTATGATCAACATCACGCTGGGCA
TCCAGTTGTTCTACGGCAACGACTGTGATGCTTTCACGTTCGGCAAACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis