Browse Element(s) Details


OsAffx.13989.1.S1_at

Description tigr:9632.m02538
TID=OsAffx.13989.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Terpene synthase family, metal binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2698011/11Terpene synthase family, metal binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26930NANA4+15745470..15746091hypothetical protein
LOC_Os04g26940OsAffx.26175.1.S1_at11/114+15749555..15750487hypothetical protein
LOC_Os04g26950OsAffx.13988.1.S1_at10/114+15751389..15753300hypothetical protein
LOC_Os04g26960OsAffx.26176.1.S1_at10/114+15756041..15760995Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g26970Os.57108.1.S1_at2/114+15761943..15762713retrotransposon protein, putative, unclassified
LOC_Os04g26970OsAffx.20369.1.S1_at2/114+15761943..15762713retrotransposon protein, putative, unclassified
LOC_Os04g26980OsAffx.13989.1.S1_at11/114+15766318..15770313Terpene synthase family, metal binding domain containing protein
LOC_Os04g26994NANA4+15781431..15781735hypothetical protein
LOC_Os04g27010OsAffx.26177.1.S1_at11/114+15795311..15795658hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13989.1.S1_at--724--7151Chr04:15767790..15767814 (25 bp)
GTCTCCCTTGTACCAGAATACCTGA
LOC_Os04g26980
OsAffx.13989.1.S1_at--457--2771Chr04:15767703..15767727 (25 bp)
AAGAGGTACCTAGTTGCTTTCAACA
LOC_Os04g26980
OsAffx.13989.1.S1_at--546--7791Chr04:15767176..15767200 (25 bp)
GGTCCCACCGGAATTACAAGCCAAG
LOC_Os04g26980
OsAffx.13989.1.S1_at--1066--4551Chr04:15767111..15767135 (25 bp)
GCGCGATTACTAGCTGCGGGTGTAA
LOC_Os04g26980
OsAffx.13989.1.S1_at--207--5511Chr04:15766576..15766600 (25 bp)
GAACAAAGCCGATATGCCATGCGCG
LOC_Os04g26980
OsAffx.13989.1.S1_at--982--591Chr04:15766558..15766582 (25 bp)
ATGCGCGGTGGAGACTTACATCAAC
LOC_Os04g26980
OsAffx.13989.1.S1_at--379--9371Chr04:15766517..15766541 (25 bp)
TCGACGTTGCCATCGCCAAGATAAA
LOC_Os04g26980
OsAffx.13989.1.S1_at--908--9431Chr04:15766453..15766477 (25 bp)
TCGGATCGACAACCAGGCTGTTCTT
LOC_Os04g26980
OsAffx.13989.1.S1_at--677--10171Chr04:15766411..15766435 (25 bp)
TATCAACTTAACGATGGCCATCCCG
LOC_Os04g26980
OsAffx.13989.1.S1_at--274--9311Chr04:15766391..15766415 (25 bp)
TCCCGATGTTCTACGGCTATGACAG
LOC_Os04g26980
OsAffx.13989.1.S1_at--862--8851Chr04:15766366..15766390 (25 bp)
TGATGCTTTCACTTTCGGCGAGCAA
LOC_Os04g26980
Target Sequence 
GTCTCCCTTGTACCAGAATACCTGAGAAAGTTTTATGAAATAATGTTGAGCACCTTTAGGGAGTTTGAGGATCAAATGCT
AAGCAATAAGAGGTACCTAGTTGCTTTCAACAAGGCAGAGTTCCAAAAGTTGTCTAGTTATTATCTGGAGGCAGCGGAAT
GGTCCCACCGGAATTACAAGCCAAGCTTCAGTGAGCAGGTGGCTCTCGCGACCGAGACCACAGGCGCGCGATTACTAGCT
GCGGGTGTAATGCTCGGCATGAGCGATGCAGCAACAACAAGAGAGGCTTTCGACTCGATCGGGTCGCAGAACAAAGCCGA
TATGCCATGCGCGGTGGAGACTTACATCAACGAGCACAAGGTCACGGTCGACGTTGCCATCGCCAAGATAAATGAGCTGG
TGGAAGATGAGTGGAAAACAACTAACCGGGCTCGGATCGACAACCAGGCTGTTCTTCCAGTGGCGCAGCGCCTTATCAAC
TTAACGATGGCCATCCCGATGTTCTACGGCTATGACAGTGATGCTTTCACTTTCGGCGAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13989.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis