Browse Element(s) Details


Os.25795.1.S1_s_at

Description gb:AA754007
DB_XREF= gi:2800713
DB_XREF=97BS0468
CLONE=97BS0468
TID=Os.25795.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.25795 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2691011/11Auxin-induced protein PCNT115, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26870Os.11469.1.S1_at11/114+15701417..15706514Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g26880NANA4+15709146..15716294transposon protein, putative, Mutator sub-class
LOC_Os04g26890OsAffx.26173.2.S1_at11/114+15717258..15718025IN2-2 protein, putative, expressed
LOC_Os04g26900OsAffx.3912.1.S1_at11/114+15719920..15724161hypothetical protein
LOC_Os04g26910Os.37724.1.S1_at11/114+15728220..15731517Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g26910Os.25795.1.S1_s_at11/114+15728220..15731517Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g26920OsAffx.26173.1.S1_s_at11/114+15736995..15740760IN2-2 protein, putative, expressed
LOC_Os04g26920Os.11837.1.S1_at11/114+15736995..15740760IN2-2 protein, putative, expressed
LOC_Os04g26920OsAffx.26173.1.S1_at10/114+15736995..15740760IN2-2 protein, putative, expressed
LOC_Os04g26930NANA4+15745470..15746091hypothetical protein
LOC_Os04g26940OsAffx.26175.1.S1_at11/114+15749555..15750487hypothetical protein
LOC_Os04g26950OsAffx.13988.1.S1_at10/114+15751389..15753300hypothetical protein
LOC_Os04g26960OsAffx.26176.1.S1_at10/114+15756041..15760995Terpene synthase family, metal binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0003700molecular_functiontranscription factor activity
GO:0004033molecular_functionaldo-keto reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25795.1.S1_s_at--1082--4911Chr04:15731322..15731346 (25 bp)
GCTTGCTCCTGTTATACATCACGTA
LOC_Os04g26910
Os.25795.1.S1_s_at--202--331Chr04:15731335..15731359 (25 bp)
ATACATCACGTATATTTGGAATGAG
LOC_Os04g26910
Os.25795.1.S1_s_at--1012--5271Chr04:15731353..15731377 (25 bp)
GAATGAGATGTCCTGTCTGTCTGTA
LOC_Os04g26910
Os.25795.1.S1_s_at--873--10831Chr04:15731378..15731402 (25 bp)
TTGTGTTATGTTCTATGCTTTCGTC
LOC_Os04g26910
Os.25795.1.S1_s_at--468--10131Chr04:15731391..15731415 (25 bp)
TATGCTTTCGTCATGTTTGTGCCTA
LOC_Os04g26910
Os.25795.1.S1_s_at--584--9391Chr04:15731398..15731422 (25 bp)
TCGTCATGTTTGTGCCTACAACCTA
LOC_Os04g26910
Os.25795.1.S1_s_at--308--10831Chr04:15731407..15731431 (25 bp)
TTGTGCCTACAACCTACTTGTGTGA
LOC_Os04g26910
Os.25795.1.S1_s_at--499--1751Chr04:15731418..15731442 (25 bp)
ACCTACTTGTGTGAAGTGCGGTTCT
LOC_Os04g26910
Os.25795.1.S1_s_at--433--5311Chr04:15731430..15731454 (25 bp)
GAAGTGCGGTTCTATAAGCCTGTGC
LOC_Os04g26910
Os.25795.1.S1_s_at--793--7891Chr04:15731437..15731461 (25 bp)
GGTTCTATAAGCCTGTGCACTGCAC
LOC_Os04g26910
Os.25795.1.S1_s_at--802--351Chr04:15731443..15731467 (25 bp)
ATAAGCCTGTGCACTGCACGCAGTA
LOC_Os04g26910
Target Sequence 
GCTTGCTCCTGTTATACATCACGTATATTTGGAATGAGATGTCCTGTCTGTCTGTATTGTGTTATGTTCTATGCTTTCGT
CATGTTTGTGCCTACAACCTACTTGTGTGAAGTGCGGTTCTATAAGCCTGTGCACTGCACGCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25795.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis