Browse Element(s) Details


Os.6256.3.S1_at

Description gb:AK110773.1
DB_XREF= gi:32995982
TID=Os.6256.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6256 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-B03, full insert sequence.
FL= gb:AK110773.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3939011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39350Os.6931.1.S1_at11/117+23580371..23582854Sugar transporter family protein, expressed
LOC_Os07g39360Os.49972.1.S1_at11/117+23583007..23584768sorbitol transporter, putative, expressed
LOC_Os07g39370OsAffx.28820.1.S1_at11/117+23587214..23588187hypothetical protein
LOC_Os07g39380NANA7+23588762..23593114retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39390Os.6256.3.S1_at11/117+23594593..23596586expressed protein
LOC_Os07g39390Os.6256.3.S1_x_at11/117+23594593..23596586expressed protein
LOC_Os07g39400Os.46375.1.S1_at10/117+23596945..23602672Ribosome associated membrane protein RAMP4 containing protein, expressed
LOC_Os07g39410OsAffx.26175.1.S1_at1/117+23604247..23607276retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g39420NANA7+23611029..23611592retrotransposon protein, putative, unclassified
LOC_Os07g39430Os.10501.1.S1_at10/117+23617995..23621471mTERF family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0003779molecular_functionactin binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6256.3.S1_at--361--4091Chr07:23595037..23595061 (25 bp)
CGACGCGGAGGCTGGCTTATACATA
LOC_Os07g39390
Os.6256.3.S1_at--176--5811Chr07:23595036..23595060 (25 bp)
GACGCGGAGGCTGGCTTATACATAG
LOC_Os07g39390
Os.6256.3.S1_at--1036--3951Chr07:23595032..23595056 (25 bp)
CGGAGGCTGGCTTATACATAGGGAT
LOC_Os07g39390
Os.6256.3.S1_at--637--6211Chr07:23595030..23595054 (25 bp)
GAGGCTGGCTTATACATAGGGATAA
LOC_Os07g39390
Os.6256.3.S1_at--69--8351Chr07:23595028..23595052 (25 bp)
GGCTGGCTTATACATAGGGATAAAC
LOC_Os07g39390
Os.6256.3.S1_at--936--1051Chr07:23595013..23595037 (25 bp)
AGGGATAAACAATCAACAGCTGTAT
LOC_Os07g39390
Os.6256.3.S1_at--710--2451Chr07:23595006..23595030 (25 bp)
AACAATCAACAGCTGTATGTGGAAA
LOC_Os07g39390
Os.6256.3.S1_at--146--7191Chr07:23594663..23594687 (25 bp)
GTCGTGCGGCGTACGGTAGAAATTG
LOC_Os07g39390
Os.6256.3.S1_at--985--7191Chr07:23594636..23594660 (25 bp)
GTCGGGCATCAGGTTCCTGTTGGAA
LOC_Os07g39390
Os.6256.3.S1_at--292--7591Chr07:23594633..23594657 (25 bp)
GGGCATCAGGTTCCTGTTGGAAATA
LOC_Os07g39390
Os.6256.3.S1_at--776--3551Chr07:23594630..23594654 (25 bp)
CATCAGGTTCCTGTTGGAAATATAG
LOC_Os07g39390
Target Sequence 
CGACGCGGAGGCTGGCTTATACATAGGGATAAACAATCAACAGCTGTATGTGGAAATGCCACGTTGGATCCATCCAAGCC
ACCACCAACTTGCTGCGAGCTCGGTTTATCATCGCAATCAAAGCCTGGGTAGACGGTGTCCGGGCTGATACCGGGGAACG
CCTCTGGATTAACCGAAATCGCACGGTACGCGCCGATGAACAGGGCTTGCCGGCGAAAGCGAGTCACGACCATGGACACC
GTCCTCTTCGAATCGAAATACACCCAGTGCACGCTGTACTTGCTGCTCCTGCGGCCGCCGCCGTGCGAGTGCGAGACCTA
GCTGCGGCTACGGTGGACAACCATCAGCCTGCCGCCATTGCCGACCAGGTGCAGGTCGTGCGGCGTACGGTAGAAATTGG
GGTCGGGCATCAGGTTCCTGTTGGAAATATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6256.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis