Browse Element(s) Details


Os.10501.1.S1_at

Description gb:AK071674.1
DB_XREF= gi:32981697
TID=Os.10501.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10501 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023107L13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107L13, full insert sequence.
FL= gb:AK071674.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3943010/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39380NANA7+23588762..23593114retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39390Os.6256.3.S1_at11/117+23594593..23596586expressed protein
LOC_Os07g39390Os.6256.3.S1_x_at11/117+23594593..23596586expressed protein
LOC_Os07g39400Os.46375.1.S1_at10/117+23596945..23602672Ribosome associated membrane protein RAMP4 containing protein, expressed
LOC_Os07g39410OsAffx.26175.1.S1_at1/117+23604247..23607276retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g39420NANA7+23611029..23611592retrotransposon protein, putative, unclassified
LOC_Os07g39430Os.10501.1.S1_at10/117+23617995..23621471mTERF family protein, expressed
LOC_Os07g39440OsAffx.28821.1.S1_at11/117+23622670..23626254Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os07g39450OsAffx.16638.1.S1_at11/117+23631179..23631717hypothetical protein
LOC_Os07g39460OsAffx.5577.1.S1_at11/117+23632184..23641506RNA recognition motif family protein, expressed
LOC_Os07g39460OsAffx.32220.1.A1_s_at1/117+23632184..23641506RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10501.1.S1_at--872--1191Chr07:23620778..23620802 (25 bp)
AGTATCATACATTTCGTCAGAGCAT
LOC_Os07g39430
Os.10501.1.S1_at--1082--5911Chr07:23620797..23620821 (25 bp)
GAGCATGCTGCTCAAAGGTTTTTCA
LOC_Os07g39430
Os.10501.1.S1_at--287--2511Chr07:23620845..23620869 (25 bp)
AACATCGAGGCGGTAGATACTTCAT
LOC_Os07g39430
Os.10501.1.S1_at--803--6811NONE
GTTTTTGAACCTATGCCACGCTGAA
NONE
Os.10501.1.S1_at--226--3851Chr07:23621003..23621025 (23 bp)
CTGAAAAGGCCTGGGTTGCTGTGCT
LOC_Os07g39430
Os.10501.1.S1_at--484--3071Chr07:23621033..23621057 (25 bp)
AATCATCAGCATTCGGCACACATAT
LOC_Os07g39430
Os.10501.1.S1_at--294--171Chr07:23621227..23621251 (25 bp)
ATTTTGTTGTCTACTGCCACGGTGA
LOC_Os07g39430
Os.10501.1.S1_at--637--3551Chr07:23621252..23621276 (25 bp)
CATCACCTTGACCATTAGCTAATGT
LOC_Os07g39430
Os.10501.1.S1_at--893--10091Chr07:23621322..23621346 (25 bp)
TAGGCAGCATCCTACGTTGCCGTAA
LOC_Os07g39430
Os.10501.1.S1_at--837--1471Chr07:23621363..23621387 (25 bp)
AGCACGATATTTTATTTTCCACGGT
LOC_Os07g39430
Os.10501.1.S1_at--209--491Chr07:23621419..23621443 (25 bp)
ATCTGTACTTTGTGCGCTTTTCTGG
LOC_Os07g39430
Target Sequence 
AGTATCATACATTTCGTCAGAGCATGCTGCTCAAAGGTTTTTCAGAGAAGACTGGAAGGAAAACATTAACATCGAGGCGG
TAGATACTTCATGATTGAGAAGTAGGTTGTTTTTGAACCTATGCCACGCTGAAAAGGCCTGGGTTGCTGTGCTGGTATTC
AATCATCAGCATTCGGCACACATATATCAATATCACAGATACATCACTAACTACAGTTTAGACTTCCTTTTTTTTTTACT
CCTATTACAACAAGGTGTAAATTCTTCATCTGATTCCTCCAGTCGAAAAACAAATGGATGTTCCAGGAGTCAATCTAAGG
ATGAAAAGGGATGCACCAGAATGGTTGATGTGGCATTTTGTTGTCTACTGCCACGGTGACATCACCTTGACCATTAGCTA
ATGTTAAATATGTCTAGCACAACAAACTAACCATCTATTAGGGATGTATTAGGCAGCATCCTACGTTGCCGTAAGTCTGT
AGCGTCGTTAAGCACGATATTTTATTTTCCACGGTTGTAAATGATAGAAATTCTATCACCNGTTNGATCTGTACTTTGTG
CGCTTTTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis