Browse Element(s) Details


OsAffx.28821.1.S1_at

Description tigr:9635.m03933
TID=OsAffx.28821.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3944011/11Zinc finger C-x8-C-x5-C-x3-H type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39400Os.46375.1.S1_at10/117+23596945..23602672Ribosome associated membrane protein RAMP4 containing protein, expressed
LOC_Os07g39410OsAffx.26175.1.S1_at1/117+23604247..23607276retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g39420NANA7+23611029..23611592retrotransposon protein, putative, unclassified
LOC_Os07g39430Os.10501.1.S1_at10/117+23617995..23621471mTERF family protein, expressed
LOC_Os07g39440OsAffx.28821.1.S1_at11/117+23622670..23626254Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os07g39450OsAffx.16638.1.S1_at11/117+23631179..23631717hypothetical protein
LOC_Os07g39460OsAffx.5577.1.S1_at11/117+23632184..23641506RNA recognition motif family protein, expressed
LOC_Os07g39460OsAffx.32220.1.A1_s_at1/117+23632184..23641506RNA recognition motif family protein, expressed
LOC_Os07g39470Os.10061.1.S1_at11/117+23648831..23652377Chitin-inducible gibberellin-responsive protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28821.1.S1_at--1083--2111Chr07:23624282..23624306 (25 bp)
ACATGGATTGCTTGGGCTTGGCTCA
LOC_Os07g39440
OsAffx.28821.1.S1_at--607--8291Chr07:23624268..23624292 (25 bp)
GGCTTGGCTCACAGTTGCAACTTGA
LOC_Os07g39440
OsAffx.28821.1.S1_at--418--6251Chr07:23624245..23624269 (25 bp)
GATGGATACTGGCACTGGGTCTAAC
LOC_Os07g39440
OsAffx.28821.1.S1_at--1132--6531Chr07:23624218..23624242 (25 bp)
GATTTATATGACCTTCCCTGTTCAC
LOC_Os07g39440
OsAffx.28821.1.S1_at--1005--7731Chr07:23624043..23624067 (25 bp)
GGTGTGCGAATTCCCTATCAGGAGA
LOC_Os07g39440
OsAffx.28821.1.S1_at--108--8911Chr07:23624000..23624024 (25 bp)
TGAGCTTCCTATACACTGAGACAGT
LOC_Os07g39440
OsAffx.28821.1.S1_at--193--5991Chr07:23623983..23624007 (25 bp)
GAGACAGTGAGGCTTATCTTATCAA
LOC_Os07g39440
OsAffx.28821.1.S1_at--32--7631Chr07:23623956..23623980 (25 bp)
GGGACAGCTCACTTCATCTGTGGAT
LOC_Os07g39440
OsAffx.28821.1.S1_at--586--3551Chr07:23623942..23623966 (25 bp)
CATCTGTGGATTGCGAGTTCTTGTC
LOC_Os07g39440
OsAffx.28821.1.S1_at--26--1231Chr07:23623927..23623951 (25 bp)
AGTTCTTGTCAAGCGCTACATGGAA
LOC_Os07g39440
OsAffx.28821.1.S1_at--637--8131Chr07:23623013..23623037 (25 bp)
GGACATCAGGTTTCGGTGTCACTAA
LOC_Os07g39440
Target Sequence 
ACATGGATTGCTTGGGCTTGGCTCACAGTTGCAACTTGATGGATACTGGCACTGGGTCTAACCAGATTTATATGACCTTC
CCTGTTCACAGCAAATTCACTGATGATGATGTCGAGAATTACTTCAAGTATTGCCTTAACTTTATTGTTACTAGGCAATT
TGGGCCTGTCTCCGGTGTGCGAATTCCCTATCAGGAGAAGCGGATGTTTGGTTTTGTGAGCTTCCTATACACTGAGACAG
TGAGGCTTATCTTATCAAAGGGGACAGCTCACTTCATCTGTGGATTGCGAGTTCTTGTCAAGCGCTACATGGAAAAGTCT
GAACTAAGAAAAATTTATCGGAAAAATAAGCAATTTGACTATCGTGAACACAGGACATCAGGTTTCGGTGTCACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis