Browse Element(s) Details


Os.10061.1.S1_at

Description gb:AY062210.1
DB_XREF= gi:25989333
GEN=GIGR2
TID=Os.10061.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10061 (NCBI UniGene Cluster)
DEF=Oryza sativa chitin-inducible gibberellin-responsive protein (GIGR2) mRNA, complete cds.
PROD=chitin-inducible gibberellin-responsive protein
FL= gb:AK073470.1 gb:AK098890.1 gb:AK061928.1 gb:AY062210.1 gb:AK122131.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3947011/11Chitin-inducible gibberellin-responsive protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39440OsAffx.28821.1.S1_at11/117+23622670..23626254Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os07g39450OsAffx.16638.1.S1_at11/117+23631179..23631717hypothetical protein
LOC_Os07g39460OsAffx.5577.1.S1_at11/117+23632184..23641506RNA recognition motif family protein, expressed
LOC_Os07g39460OsAffx.32220.1.A1_s_at1/117+23632184..23641506RNA recognition motif family protein, expressed
LOC_Os07g39470Os.10061.1.S1_at11/117+23648831..23652377Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os07g39480Os.18862.1.S1_at11/117+23652442..23657931SUSIBA2, putative, expressed
LOC_Os07g39490NANA7+23663330..23664122hypothetical protein
LOC_Os07g39500OsAffx.29384.3.S1_x_at10/117+23666427..23668732hypothetical protein
LOC_Os07g39510OsAffx.16641.1.S1_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.7129.1.S1_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.27881.1.S1_s_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.1880.1.A1_at11/117+23671365..23674718expressed protein
LOC_Os07g39520Os.16320.1.S1_at11/117+23676169..23678225Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0045449biological_processregulation of transcription
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10061.1.S1_at--521--2471Chr07:23651689..23651713 (25 bp)
AACACGGCGCCATTCCCGCAGAGGT
LOC_Os07g39470
Os.10061.1.S1_at--517--1011Chr07:23651710..23651734 (25 bp)
AGGTTCGCGGAGACGCTGGACTACT
LOC_Os07g39470
Os.10061.1.S1_at--479--8531Chr07:23651726..23651750 (25 bp)
TGGACTACTACACCGCCATCTTCGA
LOC_Os07g39470
Os.10061.1.S1_at--1137--9331Chr07:23651813..23651837 (25 bp)
TCGCGAGGGAGATCGTCAACCTCAT
LOC_Os07g39470
Os.10061.1.S1_at--404--7851Chr07:23651867..23651891 (25 bp)
GGTACGAGCCCTTCGGCAAGTGGAA
LOC_Os07g39470
Os.10061.1.S1_at--58--2951Chr07:23651890..23651914 (25 bp)
AAGGCGCGCCTCACCATGGCCGGGT
LOC_Os07g39470
Os.10061.1.S1_at--1111--3891Chr07:23651938..23651962 (25 bp)
CTGGTGAACGCCACCATCAGGACGC
LOC_Os07g39470
Os.10061.1.S1_at--608--1831Chr07:23651959..23651983 (25 bp)
ACGCTGCTGCAGAGCTACTCGGACA
LOC_Os07g39470
Os.10061.1.S1_at--574--4851Chr07:23651972..23651996 (25 bp)
GCTACTCGGACAACTACAAGCTCGC
LOC_Os07g39470
Os.10061.1.S1_at--1125--5711Chr07:23652152..23652176 (25 bp)
GACTGGTAAGGGTAGCTGTAACAAT
LOC_Os07g39470
Os.10061.1.S1_at--734--6951Chr07:23652194..23652218 (25 bp)
GTAGCGGCTAGGGTCAAACTCGAAA
LOC_Os07g39470
Target Sequence 
AACACGGCGCCATTCCCGCAGAGGTTCGCGGAGACGCTGGACTACTACACCGCCATCTTCGAGTCCATCGACCTGACGCT
GCCGAGGGACGACAGGGAGAGGATCAACATGGAGCAGCACTGCCTCGCGAGGGAGATCGTCAACCTCATCGCGTGCGAGG
GGGAGGAGAGGGCGGAGCGGTACGAGCCCTTCGGCAAGTGGAAGGCGCGCCTCACCATGGCCGGGTTCAGGCCGTCGCCG
CTCAGCTCGCTGGTGAACGCCACCATCAGGACGCTGCTGCAGAGCTACTCGGACAACTACAAGCTCGCCGAGAGGGATGG
GGCGCTCTACCTCGGGTGGAAGAGCAGGCCCCTGGTGGTCTCGTCGGCGTGGCACTAGCGTNGTGACTTTGTGAGGTGAT
CTGACNACGAACTTCCCTTGTAACCATCTTGGCTGGGGGCTTTAGAAAGCTATAGTGATCANGGACTGGTAAGGGTAGCT
GTAACAATGGTGTTGTAATGGTAAGGTAGCGGCTAGGGTCAAACTCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis