Browse Element(s) Details


Os.16320.1.S1_at

Description gb:AK072014.1
DB_XREF= gi:32982037
TID=Os.16320.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16320 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106D12, full insert sequence.
FL= gb:AK105268.1 gb:AK072176.1 gb:AK072014.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3952011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39470Os.10061.1.S1_at11/117+23648831..23652377Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os07g39480Os.18862.1.S1_at11/117+23652442..23657931SUSIBA2, putative, expressed
LOC_Os07g39490NANA7+23663330..23664122hypothetical protein
LOC_Os07g39500OsAffx.29384.3.S1_x_at10/117+23666427..23668732hypothetical protein
LOC_Os07g39510OsAffx.16641.1.S1_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.7129.1.S1_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.27881.1.S1_s_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.1880.1.A1_at11/117+23671365..23674718expressed protein
LOC_Os07g39520Os.16320.1.S1_at11/117+23676169..23678225Protein kinase domain containing protein, expressed
LOC_Os07g39530Os.54251.1.S1_at2/117+23683704..23686151NPH3 family protein, expressed
LOC_Os07g39540OsAffx.26637.2.S1_x_at10/117+23688822..23690380hypothetical protein
LOC_Os07g39540OsAffx.26637.2.S1_at10/117+23688822..23690380hypothetical protein
LOC_Os07g39540OsAffx.26637.1.S1_x_at3/117+23688822..23690380hypothetical protein
LOC_Os07g39550NANA7+23693488..23693844hypothetical protein
LOC_Os07g39560Os.47058.1.S1_at11/117+23702460..23707234RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007623biological_processcircadian rhythm
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16320.1.S1_at--1131--5631Chr07:23677656..23677680 (25 bp)
GACAGCGTCGTGCAGATCTACCACA
LOC_Os07g39520
Os.16320.1.S1_at--369--8311Chr07:23677851..23677875 (25 bp)
GGCTAGCCTGTTAACCAGCTGGGTA
LOC_Os07g39520
Os.16320.1.S1_at--998--6671Chr07:23677921..23677945 (25 bp)
GTTCTAAACGAATTAAGCTCCAGCG
LOC_Os07g39520
Os.16320.1.S1_at--78--1591Chr07:23677936..23677960 (25 bp)
AGCTCCAGCGAGTAGCAAATGTTTA
LOC_Os07g39520
Os.16320.1.S1_at--91--10331Chr07:23677957..23677981 (25 bp)
TTTATAGGTTCATGTCTCACCGGCG
LOC_Os07g39520
Os.16320.1.S1_at--841--1771Chr07:23677975..23677999 (25 bp)
ACCGGCGCTCGAGCTGTAGCCTGTA
LOC_Os07g39520
Os.16320.1.S1_at--749--9991Chr07:23677991..23678015 (25 bp)
TAGCCTGTAGCTTTGGATGTGGTTA
LOC_Os07g39520
Os.16320.1.S1_at--116--7011Chr07:23678065..23678089 (25 bp)
GTACTGATTTGATTCATGAGCTTCA
LOC_Os07g39520
Os.16320.1.S1_at--979--10231Chr07:23678115..23678139 (25 bp)
TTTGGCTTTGGCTTTGCGTGTCAAA
LOC_Os07g39520
Os.16320.1.S1_at--982--2291Chr07:23678137..23678161 (25 bp)
AAATGTGTCACAATCCTTTCAAAGG
LOC_Os07g39520
Os.16320.1.S1_at--331--2311Chr07:23678175..23678199 (25 bp)
AAAGGTGTGAGATTTCCATGAGCTG
LOC_Os07g39520
Target Sequence 
GACAGCGTCGTGCAGATCTACCACAGCGTCACCCGGGGCGTCCCCCCCGCCGCGCTCAAGCGCATCAGGGACCCCGAGCT
CCGCGCCTTCATCGAGCGCTGCATCGGCCAGCCCCGGAACCGGCCCTCCGCCGCCGAGCTCCTCCGCGACCCCTTCTTCG
CCGGCATCGACGACGACGATAGCACCGGCACGCTCGGCTAGCCTGTTAACCAGCTGGGTAGTACTAGAAATTATTGTATG
TGAATTCGATTGGAAACAAATAAACGTTCTAAACGAATTAAGCTCCAGCGAGTAGCAAATGTTTATAGGTTCATGTCTCA
CCGGCGCTCGAGCTGTAGCCTGTAGCTTTGGATGTGGTTAATTAGTGGCTAGTACTGTAGTATTTATTGTACTGTTTGTT
CTTTGGTTTGTACTGATTTGATTCATGAGCTTCAAAGAAATGGAAGATGAGGAGCTGTATTTGGCTTTGGCTTTGCGTGT
CAAATGTGTCACAATCCTTTCAAAGGATGGTTGTAAATTAAAGGTGTGAGATTTCCATGAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis