Browse Element(s) Details


Os.7129.1.S1_at

Description gb:AU032692
DB_XREF= gi:3768665
DB_XREF=AU032692
CLONE=S13564_6Z
TID=Os.7129.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.7129 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3951011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39470Os.10061.1.S1_at11/117+23648831..23652377Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os07g39480Os.18862.1.S1_at11/117+23652442..23657931SUSIBA2, putative, expressed
LOC_Os07g39490NANA7+23663330..23664122hypothetical protein
LOC_Os07g39500OsAffx.29384.3.S1_x_at10/117+23666427..23668732hypothetical protein
LOC_Os07g39510OsAffx.16641.1.S1_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.7129.1.S1_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.27881.1.S1_s_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.1880.1.A1_at11/117+23671365..23674718expressed protein
LOC_Os07g39520Os.16320.1.S1_at11/117+23676169..23678225Protein kinase domain containing protein, expressed
LOC_Os07g39530Os.54251.1.S1_at2/117+23683704..23686151NPH3 family protein, expressed
LOC_Os07g39540OsAffx.26637.2.S1_x_at10/117+23688822..23690380hypothetical protein
LOC_Os07g39540OsAffx.26637.2.S1_at10/117+23688822..23690380hypothetical protein
LOC_Os07g39540OsAffx.26637.1.S1_x_at3/117+23688822..23690380hypothetical protein
LOC_Os07g39550NANA7+23693488..23693844hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7129.1.S1_at--1158--10431Chr07:23674083..23674107 (25 bp)
TTAGTTCCATGGTCAGGCTGCCCTT
LOC_Os07g39510
Os.7129.1.S1_at--151--4551Chr07:23674102..23674126 (25 bp)
GCCCTTTCCACAGGAATCTTGCAAA
LOC_Os07g39510
Os.7129.1.S1_at--577--211Chr07:23674164..23674188 (25 bp)
ATTTGTAGTGATGATTTCCTCCAGG
LOC_Os07g39510
Os.7129.1.S1_at--329--8351Chr07:23674195..23674219 (25 bp)
GGCTGGATGTTCCTTCATGCATGAC
LOC_Os07g39510
Os.7129.1.S1_at--118--10171Chr07:23674224..23674248 (25 bp)
TATACCTCTAAACACTTGCTACTGC
LOC_Os07g39510
Os.7129.1.S1_at--758--2051Chr07:23674237..23674261 (25 bp)
ACTTGCTACTGCCAGATGGACTATA
LOC_Os07g39510
Os.7129.1.S1_at--957--3031Chr07:23674267..23674291 (25 bp)
AATCCTGGGTCATACACACTTGGGC
LOC_Os07g39510
Os.7129.1.S1_at--892--6911Chr07:23674313..23674337 (25 bp)
GTATGAGTCCATAAGCGTGAACGAA
LOC_Os07g39510
Os.7129.1.S1_at--616--5231Chr07:23674339..23674363 (25 bp)
GAATATGCTCTTTAATGTTCATGCC
LOC_Os07g39510
Os.7129.1.S1_at--753--6731Chr07:23674355..23674379 (25 bp)
GTTCATGCCATTTCTCTCATGAATG
LOC_Os07g39510
Os.7129.1.S1_at--897--10271Chr07:23674390..23674414 (25 bp)
TTTCTGGATCAGTCATCATCATGTA
LOC_Os07g39510
Target Sequence 
TTAGTTCCATGGTCAGGCTGCCCTTTCCACAGGAATCTTGCAAATTGTTNACTTAATATGAGATTTTTATTGTTTGGTTG
CATTTGTAGTGATGATTTCCTCCAGGAGCATTGGCTGGATGTTCCTTCATGCATGACTAATTATACCTCTAAACACTTGC
TACTGCCAGATGGACTATAAGACCAATCCTGGGTCATACACACTTGGGCATTTGATCCAAATGTCAGCAAGTATGAGTCC
ATAAGCGTGAACGAACGAATATGCTCTTTAATGTTCATGCCATTTCTCTCATGAATGTTGGTTATTTTTTCTGGATCAGT
CATCATCATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis