Browse Element(s) Details


OsAffx.26637.1.S1_x_at

Description tigr:9632.m05515
TID=OsAffx.26637.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5660011/11hypothetical protein
LOC_Os04g464304/11hypothetical protein
LOC_Os07g395403/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56560Os.55838.1.S1_at11/114+33510736..33513430POT family protein, expressed
LOC_Os04g56570OsAffx.26635.1.S1_at11/114+33514532..33515250heavy metal-associated domain containing protein, expressed
LOC_Os04g56580Os.54256.1.S1_at11/114+33516069..33520302expressed protein
LOC_Os04g56580OsAffx.26636.1.S1_x_at11/114+33516069..33520302expressed protein
LOC_Os04g56590Os.24672.1.S1_at9/114+33521336..33527897ATP/GTP binding protein, putative, expressed
LOC_Os04g56600OsAffx.26637.1.S1_x_at11/114+33534933..33536230hypothetical protein
LOC_Os04g56600OsAffx.26637.2.S1_x_at2/114+33534933..33536230hypothetical protein
LOC_Os04g56610Os.11269.1.S1_at4/114+33536504..33536797expressed protein
LOC_Os04g56620OsAffx.14438.1.S1_x_at11/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.11269.1.S2_at10/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.57377.1.S1_at1/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56630Os.17581.1.A1_at10/114+33545898..33553313expressed protein
LOC_Os04g56640Os.39284.1.S1_s_at11/114+33555343..33558232MED7 protein, expressed
LOC_Os04g56654Os.5973.1.S1_at11/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g56654OsAffx.26639.1.S1_at10/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26637.1.S1_x_at--482--10432Chr04:33534970..33534994 (25 bp)
TTAGGGTTGGGAGATGCCGCCGTGA
LOC_Os04g56600
OsAffx.26637.1.S1_x_at--944--7493Chr07:23688905..23688929 (25 bp)
GTGGTGTCACTGGTGTTGTCCTCGA
LOC_Os07g39540
OsAffx.26637.1.S1_x_at--748--5632Chr04:33535817..33535841 (25 bp)
GACACTGTTCTGAAAGCAGAGATCG
LOC_Os04g56600
OsAffx.26637.1.S1_x_at--108--8972Chr04:33535827..33535851 (25 bp)
TGAAAGCAGAGATCGGTGGTTGCAC
LOC_Os04g56600
OsAffx.26637.1.S1_x_at--751--7492Chr04:33535842..33535866 (25 bp)
GTGGTTGCACGGAGACGGTCGACGA
LOC_Os04g56600
OsAffx.26637.1.S1_x_at--183--4671Chr04:33536007..33536031 (25 bp)
GCGGGTACGGTGTGCGGCGCGCGAC
LOC_Os04g56600
OsAffx.26637.1.S1_x_at--902--7552Chr07:23689939..23689963 (25 bp)
GGGCGGCGACGTGCATAGGCGCGAT
LOC_Os07g39540
OsAffx.26637.1.S1_x_at--963--6172Chr07:23689981..23690221 (25 bp)
GAGGAGATGGATTTCGCGATCAGAA
LOC_Os07g39540
OsAffx.26637.1.S1_x_at--722--4631Chr04:33536149..33536173 (25 bp)
GCGATCAGAAGGAAAGTGCGACTAT
LOC_Os04g56600
OsAffx.26637.1.S1_x_at--131--5571Chr04:33536160..33536184 (25 bp)
GAAAGTGCGACTATTTCCGAGGCGC
LOC_Os04g56600
OsAffx.26637.1.S1_x_at--665--1131Chr04:33536163..33536187 (25 bp)
AGTGCGACTATTTCCGAGGCGCAGG
LOC_Os04g56600
Target Sequence 
TTAGGGTTGGGAGATGCCGCCGTGATGTGGTGGTGGCGGTGCGTGTGGCAGNGCCGGTTGGTAGTGGCCACGGAGGAGAT
CGGCGTGGTGTCACTGGTGTTGTCCTCGANNGTCGGTGGCGGCANGGAGATGTCGAGGNNNNNNNNNNNNNNNNNNNATC
GAGGATGNGGNGACACTGTTCTGAAAGCAGAGATCGGTGGTTGCACGGAGACGGTCGACGAGCCGGAGATTGGGGGCGGC
ACGNAGGAGACCGGCGANGCGGAGTTCCTGGTGGAGATCGGGGGCGGTGCGGAGGAGACCGGCGAGAAGGGCGATGAANG
GCGGAGTGGCGAGTNGAGGAGACAACTGGCGGGGTGGGAGGGCGGGTACGGTGTGCGGCGCGCGACGGCGGAGTGGGCGA
TGCGGTCTGGACGGCGGGTGGGGGCGCGAGCGCCGGGAGATGACGGGGGCGGCGACGTGCATAGGCGCGATGGGCGAGAG
AACTGGCGGAGGAGATGGATTTCGCGATCAGAAGGAAAGTGCGACTATTTCCGAGGCGCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26637.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis