Browse Element(s) Details


Os.39284.1.S1_s_at

Description gb:CF281179
DB_XREF= gi:33658566
DB_XREF=14ETL--08-C05.b1
CLONE=14ETL--08-C05
TID=Os.39284.1
CNT=12
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39284 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T48343 (A.thaliana) T48343 hypothetical protein F15A17.250 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5664011/11MED7 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56600OsAffx.26637.1.S1_x_at11/114+33534933..33536230hypothetical protein
LOC_Os04g56600OsAffx.26637.2.S1_x_at2/114+33534933..33536230hypothetical protein
LOC_Os04g56610Os.11269.1.S1_at4/114+33536504..33536797expressed protein
LOC_Os04g56620OsAffx.14438.1.S1_x_at11/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.11269.1.S2_at10/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.57377.1.S1_at1/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56630Os.17581.1.A1_at10/114+33545898..33553313expressed protein
LOC_Os04g56640Os.39284.1.S1_s_at11/114+33555343..33558232MED7 protein, expressed
LOC_Os04g56654Os.5973.1.S1_at11/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g56654OsAffx.26639.1.S1_at10/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g56670Os.15267.1.S1_at11/114+33565295..33567400U3 small nucleolar ribonucleoprotein protein IMP3, putative, expressed
LOC_Os04g56680Os.55358.1.S1_at11/114+33570364..33571315Auxin responsive protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39284.1.S1_s_at--526--2771Chr04:33556228..33556252 (25 bp)
AAGACCATCACAGTATGCTCGTAGG
LOC_Os04g56640
Os.39284.1.S1_s_at--292--6171Chr04:33556200..33556224 (25 bp)
GAGGATATTTCACTCATTTTCAAGA
LOC_Os04g56640
Os.39284.1.S1_s_at--598--10691Chr04:33556173..33556197 (25 bp)
TTGCACCACCTTCTTAATTCCTTAC
LOC_Os04g56640
Os.39284.1.S1_s_at--433--6551Chr04:33556038..33556062 (25 bp)
GATTCACATGCTTGAGAACCAAATT
LOC_Os04g56640
Os.39284.1.S1_s_at--71--5431Chr04:33556023..33556047 (25 bp)
GAACCAAATTCAGCGTCGGAAACAA
LOC_Os04g56640
Os.39284.1.S1_s_at--1055--5531Chr04:33555645..33555669 (25 bp)
GAAACCAGCCGAGTTTGCCTGCAAT
LOC_Os04g56640
Os.39284.1.S1_s_at--240--5671Chr04:33555615..33555639 (25 bp)
GACATGTGATGTATCTGCTTCCCTG
LOC_Os04g56640
Os.39284.1.S1_s_at--1099--2811Chr04:33555576..33555600 (25 bp)
AAGTTGGCTAGCTAGAGAGTGCACT
LOC_Os04g56640
Os.39284.1.S1_s_at--543--9031Chr04:33555557..33555581 (25 bp)
TGCACTTGGCAGTTCACCTGTAGAA
LOC_Os04g56640
Os.39284.1.S1_s_at--1048--6471Chr04:33555503..33555527 (25 bp)
GATACTTCTGGCTTTTGTGCAAACT
LOC_Os04g56640
Os.39284.1.S1_s_at--781--3811Chr04:33555480..33555504 (25 bp)
CTCCTTATTTATTGCCTGTTTGTGT
LOC_Os04g56640
Target Sequence 
AAGACCATCACAGTATGCTCGTAGGGTAGAGGATATTTCACTCATTTTCAAGAACTTGCACCACCTTCTTAATTCCTTAC
GACCTCACCAAGCCAGAGCCACTNTGATTCACATGCTTGAGAACCAAATTCAGCGTCGGAAACAAGCAATTGAAGATATA
AAGCAGAGGAGAGAGGAGGCACAAAAGCTACTTGGGGAATCACTGCTAATCTTAGATGGAAACCAGCCGAGTTTGCCTGC
AATGTGAAGACATGTGATGTATCTGCTTCCCTGCTTCCTAACGTGCCAAGTTGGCTAGCTAGAGAGTGCACTTGGCAGTT
CACCTGTAGAAATAGTCTAGTGAGTAGTGTGACCGTGGGAGATACTTCTGGCTTTTGTGCAAACTCCTTATTTATTGCCT
GTTTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39284.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis