Browse Element(s) Details


Os.11269.1.S2_at

Description gb:AK070456.1
DB_XREF= gi:32980480
TID=Os.11269.1
CNT=20
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.11269 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049F07, full insert sequence.
FL= gb:AK070456.1 gb:AK105225.1 gb:AK058715.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5662010/11Molybdopterin biosynthesis CNX1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56580Os.54256.1.S1_at11/114+33516069..33520302expressed protein
LOC_Os04g56580OsAffx.26636.1.S1_x_at11/114+33516069..33520302expressed protein
LOC_Os04g56590Os.24672.1.S1_at9/114+33521336..33527897ATP/GTP binding protein, putative, expressed
LOC_Os04g56600OsAffx.26637.1.S1_x_at11/114+33534933..33536230hypothetical protein
LOC_Os04g56600OsAffx.26637.2.S1_x_at2/114+33534933..33536230hypothetical protein
LOC_Os04g56610Os.11269.1.S1_at4/114+33536504..33536797expressed protein
LOC_Os04g56620OsAffx.14438.1.S1_x_at11/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.11269.1.S2_at10/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.57377.1.S1_at1/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56630Os.17581.1.A1_at10/114+33545898..33553313expressed protein
LOC_Os04g56640Os.39284.1.S1_s_at11/114+33555343..33558232MED7 protein, expressed
LOC_Os04g56654Os.5973.1.S1_at11/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g56654OsAffx.26639.1.S1_at10/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g56670Os.15267.1.S1_at11/114+33565295..33567400U3 small nucleolar ribonucleoprotein protein IMP3, putative, expressed
LOC_Os04g56680Os.55358.1.S1_at11/114+33570364..33571315Auxin responsive protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006777biological_processMo-molybdopterin cofactor biosynthesis
GO:0009734biological_processauxin mediated signaling pathway
GO:0030151molecular_functionmolybdenum ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11269.1.S2_at--839--5311Chr04:33544840..33544862 (23 bp)
GAAGGTGACACCATTCGCAATGCTA
LOC_Os04g56620
Os.11269.1.S2_at--395--3191Chr04:33544855..33544879 (25 bp)
CAATGCTATCTAGAGCCACTGCGGG
LOC_Os04g56620
Os.11269.1.S2_at--873--7951Chr04:33544879..33544990 (25 bp)
GGATCAGAGGATCAACACTTATCAT
LOC_Os04g56620
Os.11269.1.S2_at--1126--671Chr04:33545205..33545229 (25 bp)
ATGAGAATTTGGTCCTCGCGGGCTA
LOC_Os04g56620
Os.11269.1.S2_at--128--7591Chr04:33545224..33545248 (25 bp)
GGGCTATCGGCGTTCACTTCGTCAG
LOC_Os04g56620
Os.11269.1.S2_at--946--7091Chr04:33545244..33545268 (25 bp)
GTCAGCTTGTCAGTTCCTTCGTTAG
LOC_Os04g56620
Os.11269.1.S2_at--915--3371Chr04:33545271..33545295 (25 bp)
CAGCCGCGTTCAGCTCGGAGCTAAG
LOC_Os04g56620
Os.11269.1.S2_at--753--4791Chr04:33545283..33545307 (25 bp)
GCTCGGAGCTAAGCAGTGACGATTT
LOC_Os04g56620
Os.11269.1.S2_at--270--5771Chr04:33545300..33545324 (25 bp)
GACGATTTTGGTTCTGCTCACTGTT
LOC_Os04g56620
Os.11269.1.S2_at--639--4831NONE
GCTCACTGTTTTTGTTTTCACTTCA
NONE
Os.11269.1.S2_at--405--4211Chr04:33545340..33545364 (25 bp)
CCGAACCTTACGAACACCAGTGTGA
LOC_Os04g56620
Target Sequence 
GAAGGTGACACCATTCGCAATGCTATCTAGAGCCACTGCGGGGATCAGAGGATCAACACTTATCATCAACATGCCCGGGA
ACCCGAACGCCGTTGCGGAGTGCATGGAGGCGCTTCTTCCAGCACTGAAACACGCCCTGAAGCAGATAAAGGGTGATAAG
AGGGAGAAGCACCCGCGCCATGTCCCTCACGCTGAAGCTGCGCCTGTGGACCAGTGGGATCGGAGTTTCCGAGCCGCGTC
GTCCGGCAGGGGATGCTCGTGCGAGCCATGATCGGGGCCGATGAGAATTTGGTCCTCGCGGGCTATCGGCGTTCACTTCG
TCAGCTTGTCAGTTCCTTCGTTAGCCCAGCCGCGTTCAGCTCGGAGCTAAGCAGTGACGATTTTGGTTCTGCTCACTGTT
TTTGTTTTCACTTCACCCGAACCTTACGAACACCAGTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11269.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis