Browse Element(s) Details


OsAffx.26636.1.S1_x_at

Description tigr:9632.m05514
TID=OsAffx.26636.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5658011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56530Os.11626.1.S1_at11/114+33488354..33500162MAP3K epsilon protein kinase, putative, expressed
LOC_Os04g56540OsAffx.26634.1.S1_s_at11/114+33500837..33504190expressed protein
LOC_Os04g56540Os.18047.1.S1_at7/114+33500837..33504190expressed protein
LOC_Os04g56550OsAffx.8091.2.S1_at11/114+33506025..33508152hypothetical protein
LOC_Os04g56550Os.21891.1.S1_at1/114+33506025..33508152hypothetical protein
LOC_Os04g56560Os.55838.1.S1_at11/114+33510736..33513430POT family protein, expressed
LOC_Os04g56570OsAffx.26635.1.S1_at11/114+33514532..33515250heavy metal-associated domain containing protein, expressed
LOC_Os04g56580Os.54256.1.S1_at11/114+33516069..33520302expressed protein
LOC_Os04g56580OsAffx.26636.1.S1_x_at11/114+33516069..33520302expressed protein
LOC_Os04g56590Os.24672.1.S1_at9/114+33521336..33527897ATP/GTP binding protein, putative, expressed
LOC_Os04g56600OsAffx.26637.1.S1_x_at11/114+33534933..33536230hypothetical protein
LOC_Os04g56600OsAffx.26637.2.S1_x_at2/114+33534933..33536230hypothetical protein
LOC_Os04g56610Os.11269.1.S1_at4/114+33536504..33536797expressed protein
LOC_Os04g56620OsAffx.14438.1.S1_x_at11/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.11269.1.S2_at10/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.57377.1.S1_at1/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030643biological_processphosphate ion homeostasis
GO:0035299molecular_functioninositol pentakisphosphate 2-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26636.1.S1_x_at--112--7551Chr04:33517120..33517144 (25 bp)
GTGGCGCAGATAGTGTTCATCCTAA
LOC_Os04g56580
OsAffx.26636.1.S1_x_at--232--7891Chr04:33517062..33517086 (25 bp)
GGTTACTGGCTTACAACTATCTGAC
LOC_Os04g56580
OsAffx.26636.1.S1_x_at--859--3691Chr04:33517046..33517070 (25 bp)
CTATCTGACTTTATTGAGCTCCTGT
LOC_Os04g56580
OsAffx.26636.1.S1_x_at--138--5911Chr04:33517031..33517055 (25 bp)
GAGCTCCTGTCAGAGGCAATCTTTA
LOC_Os04g56580
OsAffx.26636.1.S1_x_at--644--7571Chr04:33516946..33516970 (25 bp)
GGGCGATTCATCTGTACTATAACAT
LOC_Os04g56580
OsAffx.26636.1.S1_x_at--708--2091Chr04:33516925..33516949 (25 bp)
ACATCATTTCTCAGCCTTGTTTGGT
LOC_Os04g56580
OsAffx.26636.1.S1_x_at--1061--9851Chr04:33516882..33516906 (25 bp)
TACAGAACTTCTGCGCAAGTACTCC
LOC_Os04g56580
OsAffx.26636.1.S1_x_at--1106--4311Chr04:33516856..33516880 (25 bp)
CCTTGCATTCTCTTCCATTGGACAA
LOC_Os04g56580
OsAffx.26636.1.S1_x_at--181--2051Chr04:33516811..33516835 (25 bp)
ACTTTCTTATCTCTGCTACTGCAAA
LOC_Os04g56580
OsAffx.26636.1.S1_x_at--458--4451Chr04:33516778..33516802 (25 bp)
GCCTAATGATCAGCTTTCGACCAAG
LOC_Os04g56580
OsAffx.26636.1.S1_x_at--31--8851Chr04:33516525..33516549 (25 bp)
TGATCTGGATGTGAAACCCTTGGAT
LOC_Os04g56580
Target Sequence 
GTGGCGCAGATAGTGTTCATCCTAATGAAACAGAGAAATGTCTTGAAGATCTGAGCAAGGTTACTGGCTTACAACTATCT
GACTTTATTGAGCTCCTGTCAGAGGCAATCTTTAAGTCTGGAGTGTTGGGTAAACTTTTAGCCACTCAAAAACTGGATGA
TCATGACATCGAAGGGGCGATTCATCTGTACTATAACATCATTTCTCAGCCTTGTTTGGTATGCAAAAGTATAACTGATA
CAGAACTTCTGCGCAAGTACTCCACCTTGCATTCTCTTCCATTGGACAAGAGTGAGAAGATTGTCAGGGACTTTCTTATC
TCTGCTACTGCAAAAGATTGTAGCCTAATGATCAGCTTTCGACCAAGACAGAGTGGAACAACAGATTCTGAGTACGATTC
TGTATTTCTTGATTCAGTGAACCAAAGCTATGATTACAAGGCATATTTTATTGATCTGGATGTGAAACCCTTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26636.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis