Browse Element(s) Details


Os.55838.1.S1_at

Description gb:AK108874.1
DB_XREF= gi:32994083
TID=Os.55838.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-C12, full insert sequence.
FL= gb:AK108874.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5656011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56520Os.5032.1.S1_at10/114+33485810..33488270Reversibly glycosylated polypeptide family protein, expressed
LOC_Os04g56530Os.11626.1.S1_at11/114+33488354..33500162MAP3K epsilon protein kinase, putative, expressed
LOC_Os04g56540OsAffx.26634.1.S1_s_at11/114+33500837..33504190expressed protein
LOC_Os04g56540Os.18047.1.S1_at7/114+33500837..33504190expressed protein
LOC_Os04g56550OsAffx.8091.2.S1_at11/114+33506025..33508152hypothetical protein
LOC_Os04g56550Os.21891.1.S1_at1/114+33506025..33508152hypothetical protein
LOC_Os04g56560Os.55838.1.S1_at11/114+33510736..33513430POT family protein, expressed
LOC_Os04g56570OsAffx.26635.1.S1_at11/114+33514532..33515250heavy metal-associated domain containing protein, expressed
LOC_Os04g56580Os.54256.1.S1_at11/114+33516069..33520302expressed protein
LOC_Os04g56580OsAffx.26636.1.S1_x_at11/114+33516069..33520302expressed protein
LOC_Os04g56590Os.24672.1.S1_at9/114+33521336..33527897ATP/GTP binding protein, putative, expressed
LOC_Os04g56600OsAffx.26637.1.S1_x_at11/114+33534933..33536230hypothetical protein
LOC_Os04g56600OsAffx.26637.2.S1_x_at2/114+33534933..33536230hypothetical protein
LOC_Os04g56610Os.11269.1.S1_at4/114+33536504..33536797expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55838.1.S1_at--264--7171Chr04:33512970..33512994 (25 bp)
GTCTCGGCGGCGTTCAACATGATCG
LOC_Os04g56560
Os.55838.1.S1_at--255--3931Chr04:33512977..33513001 (25 bp)
CGGCGTTCAACATGATCGGGCAGAT
LOC_Os04g56560
Os.55838.1.S1_at--588--9831Chr04:33513009..33513033 (25 bp)
TACAACACGGAGTTCCCGGACCAGA
LOC_Os04g56560
Os.55838.1.S1_at--116--2611Chr04:33513048..33513072 (25 bp)
AACGCGGCGTTCTACTGCGCGCAGG
LOC_Os04g56560
Os.55838.1.S1_at--1004--10751Chr04:33513100..33513124 (25 bp)
TTGTGAACGTCGTGAACGCGAGGAC
LOC_Os04g56560
Os.55838.1.S1_at--911--9331Chr04:33513154..33513178 (25 bp)
TCGCCGAGGACATCAACGCCGGGAA
LOC_Os04g56560
Os.55838.1.S1_at--696--7611Chr04:33513174..33513198 (25 bp)
GGGAAGCTGGACCACTTCTACTACG
LOC_Os04g56560
Os.55838.1.S1_at--66--8811Chr04:33513208..33513232 (25 bp)
TGTTCGCGGCGATCAACTTCGTCTA
LOC_Os04g56560
Os.55838.1.S1_at--84--9891Chr04:33513249..33513273 (25 bp)
TACTTCTACCGCTACAAGGGCGAGC
LOC_Os04g56560
Os.55838.1.S1_at--730--1311Chr04:33513311..33513335 (25 bp)
AGAGGCCGTCCTCCTGAAGCACTAG
LOC_Os04g56560
Os.55838.1.S1_at--230--1251Chr04:33513349..33513373 (25 bp)
AGATTGGTTACGGTAGATCACTCTA
LOC_Os04g56560
Target Sequence 
GTCTCGGCGGCGTTCAACATGATCGGGCAGATGGAGTTCTACAACACGGAGTTCCCGGACCAGATGCGCACGCTCGCCAA
CGCGGCGTTCTACTGCGCGCAGGGGGCGAGCAGCTACCTGGCCACGGCGGTTGTGAACGTCGTGAACGCGAGGACGAGGC
GGCGCGGCGGCGGGCAGGGCTGGGTCGCCGAGGACATCAACGCCGGGAAGCTGGACCACTTCTACTACGCCATGGCCGTG
TTCGCGGCGATCAACTTCGTCTACTTCCTCGTCTGCTCCTACTTCTACCGCTACAAGGGCGAGCCAGAGGTGGCGGCCGA
GGACTCGCCACCGGCCACTCCAGAGGCCGTCCTCCTGAAGCACTAGCCAGTAGCTAGCAAGATTGGTTACGGTAGATCAC
TCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis